Release 56
(Apr 24, 2025)

This linkage-map based data has been obsolete
(see Release notes 51, 52, 53). Information
provided here is only for retrospective online
support of publications that used this data.

QTL 2788 Description:

 Trait Information
Trait name: Subcutanous fat area Vertebrate Trait Ontology: Subcutaneous adipose amount
Reported name: Fat area Product Trait Ontology: Dressed carcass fat content
Symbol: FATAREA Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:7
QTL Peak Location:3.7 (cM)
QTL Span:4-20 (cM)
4.4-10.1 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:S0025
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:Microsatellites
Analysis type:QTL
Model tested:n/a
Test base:n/a
Threshold significance level:n/a
F_Stat6.67
VARIANCE3.41%
Dominance effect:2.21 ±
Additive effect:1.43 ± 0
Associated Gene:n/a
Cis/Trans acting type:
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
(none)

User inputs on QTL #2788
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  •  QTL Experiment in Brief
    Animals:Nine animals from different breeds/crossbreeds was used: one sample each from Pietrain, Large White, German Landrace, Duroc and Hampshire breeds, as well as one F1 and one F2 crossbred animals of the Berlin Miniature Pig and two samples of Wild Bo
     Breeds associated:
    n/a
    Design:438 F2 animals from an experimental cross of Duroc x Berlin Miniature Pig were used for the mapping and linkage analyses.
    Analysis:The QTL analyses were carried out using the program QTL Express (http://qtl.cap.ed.ac.uk/). Significance thresholds at the 1 and 5% levels were determined empirically by permutation (5000 iterations).
    Software:QTL Express
    Notes: 
    Links:Edit

     Reference
    Authors:S. Ponsuksili, S. Chomdej, E. Murani, U. Bla¨ser, H.-J. Schreinemachers, K. Schellander and K. Wimmers
    Affiliation:Institute of Animal Breeding and Genetics, University of Bonn, 53115 Bonn, Germany.
    Title:SNP detection and genetic mapping of porcine genes encoding enzymes in hepatic metabolic pathways and evaluation of linkage with carcass traits
    Journal:Animal Genetics, 2005, 36(6):477-83
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  

     Additional Information
    Comments:13th/14th rib
    User inputs on reference #16293120
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  • Cite this Data:

    Animal QTLdb: QTL2788 was published in 2005, and was curated into QTLdb on 2006-12-05. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:2788

     

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