| QTL Map Information |
|---|
| Chromosome: | 6 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
77.4-77.4 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs1110798053 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Large White pigs. |
| Breeds associated:
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| Design: | Pigs were genotyped using the KPS Porcine Breeding 50K Chip v1. Imputation was performed using the Pig Haplotype Reference Panel (PHARP v2) and Swine Imputation Server (SWIM 1.0), after which 1,017,199 and 1,019,225 autosomal SNPs were retained, respectively. GWAS were performed for reproductive traits. |
| Analysis: | FarmCPU models were used for GWAS. |
| Software: | GAPIT3, CMplot in R, BedTools, DMU v6.0 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Sun J, Xiao J, Jiang Y, Wang Y, Cao M, Wei J, Yu T, Ding X, Yang G |
| Affiliation: | Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, Laboratory of Animal Fat Deposition & Muscle Development, College of Animal Science and Technology, Northwest A&F University, Xianyang 712100, China |
| Title: | Genome-Wide Association Study on Reproductive Traits Using Imputation-Based Whole-Genome Sequence Data in Yorkshire Pigs |
| Journal: | Genes, 2023, 14(4):861 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | imputed with PHARP |
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