| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
161.6-161.6 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 2.86E-6 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | CPLX4 (complexin 4) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were American, Canadian, and Danish Large White pigs. |
| Breeds associated:
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| Design: | Animals were genotyped using the GeneSeek GGP porcine HD array, and GWAS were performed for growth and backfat traits. A total of 34150, 34543, or 34497 SNPs were used for analysis in the Canadian, Danish, and American lines, respectively. A meta-analysis was performed on the combined data. |
| Analysis: | A linear mixed model was used for GWAS. |
| Software: | PLINK v1.90, GCTA v1.93.3 beta, METAL |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Zhou P, Yin C, Wang Y, Yin Z, Liu Y |
| Affiliation: | Department of Animal Genetics and Breeding, College of Animal Science and Technology, Nanjing Agricultural University, Nanjing 210095, China |
| Title: | Genomic Association Analysis of Growth and Backfat Traits in Large White Pigs |
| Journal: | Genes, 2023, 14(6):1258 |
| Links: |
PubMed | Abstract | List all data
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| Additional Information |
|---|
| Comments: | Meta-analysis |
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