| QTL Map Information |
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| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
114.6-114.6 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80849099 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 3.00E-06 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
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| Animals: | Pigs were from five Duroc populations, four Landrace populations, and four Yorkshire populations. |
| Breeds associated:
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| Design: | Animals were genotyped using the 50K GeneSeek GGP-Porcine BeadChip, Illumina Porcine SNP60 BeadChip, and "ZhongxinI" Porcine Breeding Chip, and GWAS were performed for days to 100kg and backfat at 100 kg. |
| Analysis: | GWAS were performed in a single population (single GWAS) as well as across populations (meta- and mega-GWAS). The leave-one-chromosome-out (LOCO) module in GCTA was used. |
| Software: | Beagle v5.1, PLINK v1.9, GGPLOT2, GCTA v1.94.0beta, METAL |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Zhong Z, Li G, Xu Z, Zeng H, Teng J, Feng X, Diao S, Gao Y, Li J, Zhang Z |
| Affiliation: | National Engineering Research Center for Breeding Swine Industry, Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding, College of Animal Science, South China Agricultural University, Guangzhou, China |
| Title: | Evaluating three strategies of genome-wide association analysis for integrating data from multiple populations |
| Journal: | Animal Genetics, 2024, 55(2):265-276 |
| Links: |
PubMed | Abstract | List all data
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| Additional Information |
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| Comments: | mega-GWAS |
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