| QTL Map Information |
|---|
| Chromosome: | 18 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
10.6-10.6 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs333275539 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | - |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | ZC3HAV1 (zinc finger CCCH-type containing, antiviral 1) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Duroc x (Landrace x Yorkshire) crossbred pigs. |
| Breeds associated:
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| Design: | Pigs were genotyped using the Neogen GGP Porcine 50K SNP chip, with data imputed to whole-genome sequence level, and GWAS was performed for lean meat percentage. A total of 15,983,464 SNPs were used for analysis. |
| Analysis: | Linear mixed models were used. |
| Software: | EAGLE, Minimac3, GCTA, SKLEARN v1.1.2, PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Ibragimov E, Pedersen AØ, Sloth NM, Fredholm M, Karlskov-Mortensen P |
| Affiliation: | Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg, Denmark |
| Title: | Identification of a novel QTL for lean meat percentage using imputed genotypes |
| Journal: | Animal Genetics, 2024, 55(4):658-663 |
| Links: |
PubMed | Abstract | List all data
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