| QTL Map Information |
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| Chromosome: | 3 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
16.8-16.8 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs330928088 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | - |
| Test base: | - |
| Threshold significance level: | Significant |
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P_values | <0.05 | | Dominance effect: | 0.02 |
| Additive effect: | 0.07 |
| Associated Gene: | PHKG (phosphorylase kinase gamma subunit) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| QTL Experiment in Brief |
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| Animals: | Animals were Duroc pigs. |
| Breeds associated:
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| Design: | Pigs were genotyped using either the Illunmina PorcineSNP60 v2 Genotyping BeadChip, the GGP Porcine HD Array, or whole-genome sequencing, and GWAS was performed for ultimate pH. |
| Analysis: | A linear mixed model was used for GWAS. Based on GWAS results, additional animals were phenotyped for ultimate pH and meat color measurements, and association analyses were performed for variants in 3 regions of interest using a linear model. |
| Software: | GEMMA, Beagle |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Molinero E, Pena RN, Estany J, Ros-Freixedes R |
| Affiliation: | Departament de Ciència Animal, Universitat de Lleida, Lleida, Spain |
| Title: | A novel QTL region for pH and meat color in Duroc pigs |
| Journal: | Animal Genetics, 2024, 55(3): 465-470 |
| Links: |
PubMed | Abstract | List all data
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