| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
270.6-270.6 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs330839241 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | - |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 2.70E-12 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Pigs were from a Large White sow line and a Synthetic boar line. |
| Breeds associated:
n/a
|
| Design: | Animals were initially genotyped using Illumina Geneseek custom 50K or 25K SNP chips, with data imputed to 660K then to whole-genome level, and GWAS were performed for growth rate and backfat thickness. |
| Analysis: | Single-SNP GWAS was performed using linear models. |
| Software: | PLINK v1.90b3.30, FImpute v3.0, GCTA v1.93.2, Beagle 5.4 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Boshove A, Derks MFL, Sevillano CA, Lopes MS, van Son M, Knol EF, Dibbits B, Harlizius B |
| Affiliation: | Topigs Norsvin Research Center, 's-Hertogenbosch, the Netherlands |
| Title: | Large scale sequence-based screen for recessive variants allows for identification and monitoring of rare deleterious variants in pigs |
| Journal: | PLoS genetics, 2024, 20(1): e1011034 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Synthetic line |
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