| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | 49.59 (cM) |
| QTL Span: | 49.49-49.68 (cM)
102.6-103.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs80969454 |
| Peak: | |
| Lower, "Significant": | rs80806413 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | -0.75 |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were from the IBMAP (Iberian x Landrace) population. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for fatty acid composition in backfat and intramuscular fat. A total of 14,503 SNPs were used for GWAS. A classical QTL scan was also performed, using 8,417 SNPs. |
| Analysis: | Animal models were used. |
| Software: | Qxpak |
| Notes: | Entered data is from GWAS only. |
| Links: | Edit |
| Reference |
|---|
| Authors: | Muñoz M, Rodríguez MC, Alves E, Folch JM, Ibañez-Escriche N, Silió L, Fernández AI |
| Affiliation: | INIA, Mejora Genética Animal, 28040 Madrid, Spain |
| Title: | Genome-wide analysis of porcine backfat and intramuscular fat fatty acid composition using high-density genotyping and expression data |
| Journal: | BMC genomics, 2013, 14: 845 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | IMF |
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