| QTL Map Information |
|---|
| Chromosome: | 2 |
| QTL Peak Location: | 1.37 (cM) |
| QTL Span: | 1.37-1.37 (cM)
3.3-3.3 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81474737 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 19.32 | | P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Large White x Minzhu pigs. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for lean meat traits. A total of 48,337 SNPs were used for analysis. |
| Analysis: | GWAS was performed using the genome-wide rapid association using the mixed model and regression-genomic control (GRAMMAR-GC) approach. |
| Software: | DMU, GenABEL in R, SAS |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Liu X, Wang LG, Luo WZ, Li Y, Liang J, Yan H, Zhao KB, Wang LX, Zhang LC |
| Affiliation: | Key Laboratory of Farm Animal Genetic Resources and Germplasm Innovation of Ministry of Agriculture of China, Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China |
| Title: | A genome-wide SNP scan in a porcine Large White x Minzhu intercross population reveals a locus influencing muscle mass on chromosome 2 |
| Journal: | Animal science journal, 2014, 85(12): 969-975 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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