| QTL Map Information |
|---|
| Chromosome: | 15 |
| QTL Peak Location: | 91.02 (cM) |
| QTL Span: | 91.02-91.02 (cM)
101.7-101.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs324157584 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
P_values | 0.0002 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Finnish Yorkshire boars (14 affected with KAD and 21 controls). |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for SNP association with knobbed acrosome defect. A total of 47,055 SNPs were used for analysis. |
| Analysis: | A recessive model was used. |
| Software: | PLINK, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Sironen A, Uimari P, Nagy S, Paku S, Andersson M, Vilkki J |
| Affiliation: | Agrifood Research Finland, MTT, Biotechnology and Food Research, Genomics, FI-36100 Jokioinen, Finland |
| Title: | Knobbed acrosome defect is associated with a region containing the genes STK17b and HECW2 on porcine chromosome 15 |
| Journal: | BMC Genomics, 2010, 11:699 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Knobbed acrosome defect |
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