Release 56
(Apr 24, 2025)

QTL 37971 Description:

 Trait Information
Trait name: Subcutaneous fat thickness Vertebrate Trait Ontology: Subcutaneous adipose thickness
Trait details: backfat thickness at first rib Product Trait Ontology: n/a
Symbol: SUBCFAT Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:4
QTL Peak Location:76.08 (cM)
QTL Span:76.08-76.08 (cM)
75.9-75.9 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs80971503
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:Association
Model tested:Mendelian
Test base:Genome-wise
Threshold significance level:Significant
P_values<0.05
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Pigs were from a White Duroc x Erhualian F2 intercross population and a Chinese Sutai half-sib population.
     Breeds associated:
    Design:Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for growth and fatness traits. A total of 39,788 SNPs were used for analysis.
    Analysis:A general linear mixed model was used.
    Software:GenABEL in R, PLINK
    Notes: 
    Links:Edit

     Reference
    Authors:Qiao R, Gao J, Zhang Z, Li L, Xie X, Fan Y, Cui L, Ma J, Ai H, Ren J, Huang L
    Affiliation:Key Laboratory for Animal Biotechnology of Jiangxi Province and the Ministry of Agriculture of China, Jiangxi Agricultural University, Nanchang, P.R. China
    Title:Genome-wide association analyses reveal significant loci and strong candidate genes for growth and fatness traits in two pig populations
    Journal:Genetics, Selection, Evolution : GSE, 2015, 47(1): 17
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #25885760
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  • Cite this Data:

    Animal QTLdb: QTL37971 was published in 2015, and was curated into QTLdb on 2015-05-13. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:37971

     

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