| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | 3.41 (cM) |
| QTL Span: | 3.41-3.41 (cM)
5.6-5.6 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81383262 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
P_values | 0.004 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Pigs were from two dam lines: Dutch Landrace based and Large White based. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for gestation length. A total of 40,776 SNPs (DL) or 42,244 SNPs (LW) were used for analysis. |
| Analysis: | Single-SNP GWAS was performed using deregressed EBVs as the response variable. |
| Software: | ASREML, GenABEL in R, Qvalue in R, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Hidalgo A M, Lopes M S, Harlizius B, Bastiaansen J W M |
| Affiliation: | Animal Breeding and Genomics Centre, Wageningen University, P.O. Box 338, 6700 AH, Wageningen, the Netherlands |
| Title: | Genome-wide association study reveals regions associated with gestation length in two pig populations |
| Journal: | Animal genetics, 2016, 47(2):223-6 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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