| QTL Map Information |
|---|
| Chromosome: | 4 |
| QTL Peak Location: | 28.32 (cM) |
| QTL Span: | 28.32-28.32 (cM)
28.5-28.5 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81381581 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were female Duroc pigs. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for muscle pH at 45 minutes and 24 hours post-mortem. A total of 48,175 SNPs were used for analysis. |
| Analysis: | Genome-wide association analysis was performed on residuals, using a best linear unbiased prediction (BLUP) model, and SNPs at each locus were used for further association tests. |
| Software: | Haploview, R software, SAS |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Chung H Y, Lee K T, Jang G W, Choi J G, Hong J G, Kim T H |
| Affiliation: | Animal Genomics and Bioinformatics Division, National Institute of Animal Science, Suwon, Korea |
| Title: | A genome-wide analysis of the ultimate pH in swine |
| Journal: | Genetics and molecular research : GMR, 2015, 14(4): 15668-82 |
| Links: |
PubMed | Abstract | List all data
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