QTL Map Information |
Chromosome: | 11 |
QTL Peak Location: | 32.44 (cM) |
QTL Span: | 32.44-32.44 (cM) 29.7-29.7 (Mbp) |
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Upper, "Suggestive": | n/a |
Upper, "Significant": | n/a |
Peak: | rs80928724 |
Lower, "Significant": | n/a |
Lower, "Suggestive": | n/a |
Marker type: | SNP |
Analysis type: | Association |
Model tested: | Mendelian |
Test base: | Chromosome-wise |
Threshold significance level: | Significant |
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VARIANCE | 2.58 | P_values | <0.05 | Dominance effect: | n/a |
Additive effect: | n/a |
Associated Gene: | n/a |
Cis/Trans acting type: |  |
Links:
NCBI GeneDB | Edit |
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Extended information: |
(none) |
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QTL Experiment in Brief |
Animals: | Boars were of type Pietrain x cross-bred sow. Dams were either crosses of German Edelschwein and German Landrace (cross I and II) or F2 sows based on Large White x (Leicoma x German Landrace) (cross III).
Animal breed (IDs) involved: |
Breeds associated:
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Design: | Pigs were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for growth, carcass, meat quality, and boar taint-related traits. A total of 43,527 SNPs were used for analysis. |
Analysis: | GWAS was performed using the genome-wide rapid association using mixed model and regression (GRAMMAR) approach. |
Software: | GenABEL in R |
Notes: | This study also includes principal component analysis; this data was not entered. |
Links: | Edit |
Reference |
Authors: | Große-Brinkhaus C, Storck LC, Frieden L, Neuhoff C, Schellander K, Looft C, Tholen E |
Affiliation: | Institute of Animal Science, University of Bonn, Endenicher Allee 15, 53115, Bonn, Germany |
Title: | Genome-wide association analyses for boar taint components and testicular traits revealed regions having pleiotropic effects |
Journal: | BMC genetics, 2015, 16: 36 |
Links: |
PubMed | Abstract | List all data
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