| QTL Map Information |
|---|
| Chromosome: | 7 |
| QTL Peak Location: | 125.32 (cM) |
| QTL Span: | 125.32-125.32 (cM)
97.6-97.6 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs709317845 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 0.22 | | P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | VRTN (vertebrae development homolog (pig)) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were purebred Duroc pigs. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for 52 traits related to growth, carcass, and meat quality. A total of 38,128 SNPs were used for analysis. |
| Analysis: | Linear mixed model association tests were used for SNP-based GWAS. Haplotype-based GWAS was also performed. |
| Software: | PLINK, GEMMA, R software, Haploview, ASReml, GLASCOW |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Sato S, Uemoto Y, Kikuchi T, Egawa S, Kohira K, Saito T, Sakuma H, Miyashita S, Arata S, Kojima T, Suzuki K |
| Affiliation: | Graduate School of Agricultural Science, Tohoku University, Sendai, Miyagi, 981-8555, Japan |
| Title: | SNP- and haplotype-based genome-wide association studies for growth, carcass, and meat quality traits in a Duroc multigenerational population |
| Journal: | BMC genetics, 2016, 17: 60 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | First thoracic-last lumbar |
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