Table 1-1.
Set I - VIII Fluorescent Primer
Multiplexing Group Information (Tested)

NOTE: All markers in this table are arranged by multiplex groups
1. Markers with the same group number can be multiplexed.
2. Those marked with "-" don't have multiplex group information available.

Chromosomal LocationsMarker Name1Fluorescent Dye2PCR Annealing TemperatureMultiplex GroupPrimer Set3

Chr. 17SW2441Fam581Set IV
Chr. XSW2456Hex581Set III
Chr. 5SW1468Tet552Set IV
Chr. 2SW1879Hex552Set VII
Chr. 15SW1983Hex553Set IV
Chr. 12SW2494Tet553Set VII
Chr. 10SW497Fam584Set IV
Chr. 12S0090Fam554Set I/II
Chr. 14SW55Fam584Set VII
Chr. 10SW830Fam555Set I/II
Chr. 9SW21Hex606Set III
Chr. 15SW964Tet587Set IV
Chr. 8SW763Hex628Set IV
Chr. XS0218Tet558Set I/II
Chr. 1SW974Fam589Set IV
Chr. 15SW1683Tet589Set IV
Chr. 2SW2192Hex6510Set IV
Chr. 3SW2408Fam5811Set IV
Chr. 4S0301Fam5511Set I/II
Chr. 13SW935Tet5812Set IV
Chr. 16S0111Hex5812Set IV
Chr. 2S0036Hex5813Set III
Chr. 14SWC27Fam5815Set IV
Chr. 7S0025Fam5516Set I/II
Chr. XSW949Tet5817Set III
Chr. 12SW957Hex5818Set III
Chr.18SW1682Tet5820Set VIII
Chr. 5SW995Fam5821Set III
Chr. 13S0215Hex5522Set I/II
Chr. 3S0352Fam5822Set VII
Chr. 7SW1369Hex6023Set IV
Chr. 11S0071Hex5523Set I/II
Chr. 17SW1031Fam5823Set IV
Chr. 7SW1354Tet5824Set IV
Chr. 7S0101Hex6025Set I/II
Chr. 12SW2490Hex5825Set IV
Chr. 1SW1301Fam5826Set IV
Chr. XSW980Fam5527Set I/II
Chr. 1SW1824Tet6028Set IV
Chr. 10SWC19Hex5828Set IV
Chr. 6SW1881Fam5829Set IV
Chr. 17SW335Tet5529Set IV
Chr. 8SW1029Hex6030Set IV
Chr. 13SW864Fam6030Set IV
Chr. 14SW1125Tet6030Set IV
Chr. 2SWR2157Hex6031Set IV
Chr. 4S0214Tet5532Set I/II
Chr. 6S0087Tet5832Set I/II
Chr. 4SW2404Hex6233Set III
Chr. XSW2588Fam6233Set IV
Chr. 14SW2612Tet6034Set IV
Chr. 1SW1515Hex6034Set V
Chr. 8S0086Fam5535Set I/II
Chr. 11SW703Hex5836Set IV
Chr. 5SW2425Tet5836Set V
Chr. 12SW874Hex5537Set I/II
Chr. 2SW240Tet5540Set I/II
Chr. 11S0009Fam5540Set I/II
Chr. 16SW2517Fam5840Set IV
Chr. 2SW2623Tet6041Set IV
Chr. 3SW902Fam5541Set I/II
Chr. 9SW983Hex6041Set III
Chr. 6SW2406Tet5842Set III
Chr. XSW2470Hex5842Set IV
Chr. 5SW1200Fam6043Set IV
Chr. 5SW967Hex5843Set I/II
Chr. 2SW1026Tet6044Set IV
Chr. 5SW378Tet6045Set III
Chr. XSW2534Hex6045Set IV
Chr. 1S0112Tet5546Set I/II
Chr. 9SW2401Fam5846Set IV
Chr. 10SW920Fam5546Set I/II
Chr. 7SW764Tet6047Set III
Chr. 4SW856Tet6248Set IV
Chr. 3SW2618Hex5849Set IV
Chr. 13SW1056Tet6250Set I/II
Chr. 17SW2431Fam6051Set IV
Chr. 6SW322Tet6252Set III
Chr. 15SW1119Hex6052Set I/II
Chr. 6SW122Fam5553Set I/II
Chr. 6SW2419Tet5854Set III
Chr. 9SW911Fam5554Set I/II
Chr. 6S0121Hex5555Set VIII
Chr. 8SW61Hex5565Set I/II
Chr. 1SW64Tet58-Set I/II
Chr. 1SW1851Tet62-Set III
Chr. 1CGAHex55-Set I/II
Chr. 1SW781Hex55-Set I/II
Chr. 1SW2185Fam55-Set IV
Chr. 1S0313Hex55-Set I/II
Chr. 1S0113Tet60-Set I/II
Chr. 1S0155Fam55-Set I/II
Chr. 1S0316Fam62-Set V
Chr. 1S0320Tet58-Set V
Chr. 1S0056Hex58-Set V
Chr. 2SW2443Hex62-Set III
Chr. 2SW256Fam62-Set I/II
Chr. 2SWR783Tet62-Set III
Chr. 2S0141Hex55-Set I/II
Chr. 2SW1201Tet58-Set IV
Chr. 2SW395Fam55-Set I/II
Chr. 2S0010Hex55-Set I/II
Chr. 2S0226Fam55-Set I/II
Chr. 2SW2514Hex62-Set III
Chr. 2S0378Hex55-Set I/II
Chr. 2SW1564Fam58-Set V
Chr. 3SW274Tet60-Set IV
Chr. 3SW72Fam58-Set I/II
Chr. 3SWR1637Hex65-Set IV
Chr. 3S0206Fam60-Set I/II
Chr. 3S0164Tet55-Set I/II
Chr. 3S0216Tet55-Set I/II
Chr. 3S0002Hex62-Set I/II
Chr. 3SW349Hex62-Set IV
Chr. 3S0165Fam62-Set III
Chr. 3SW2570Tet58-Set V
Chr. 4S0227Hex55-Set I/II
Chr. 4S0001Fam55-Set I/II
Chr. 4SW35Fam58-Set III
Chr. 4SW839Fam62-Set III
Chr. 4S0217Tet62-Set III
Chr. 4S0073Fam55-Set III
Chr. 4SW445Tet58-Set III
Chr. 4S0097Tet58-Set I/II
Chr. 4S0011Hex55-Set V
Chr. 5SW1482Tet55-Set III
Chr. 5SWR453Hex55-Set I/II
Chr. 5SW2Fam55-Set III
Chr. 5SW1134Tet60-Set III
Chr. 5S0005Tet58-Set I/II
Chr. 5IGF1Fam58-Set I/II
Chr. 6S0035Fam65-Set III
Chr. 6SW1057Hex58-Set I/II
Chr. 6S0220Fam60-Set I/II
Chr. 6SW316Hex58-Set III
Chr. 6S0003Hex55-Set I/II
Chr. 6S0228Tet55-Set I/II
Chr. 6SW1353Hex58-Set V
Chr. 6S0099Fam68-Set V
Chr. 7SWR1343Fam60-Set IV
Chr. 7S0064Fam55-Set I/II
Chr. 7SW472Tet58-Set III
Chr. 7S0102Fam55-Set I/II
Chr. 7SW175Hex55-Set I/II
Chr. 7S0066Tet55-Set I/II
Chr. 7SW352Tet55-Set III
Chr. 7SW632Tet58-Set I/II
Chr. 7S0212Fam55-Set III
Chr. 8SW2410Hex55-Set III
Chr. 8SW905Fam55-Set I/II
Chr. 8SW1702Tet60-Set IV
Chr. 8S0017Hex55-Set I/II
Chr. 8S0069Hex62-Set IV
Chr. 8S0225Hex55-Set I/II
Chr. 8OPN (SPP1)Hex60-Set I/II
Chr. 8S0178Tet58-Set I/II
Chr. 8S0098Tet65-Set V
Chr. 9SW940Hex58-Set III
Chr. 9SW539Fam55-Set I/II
Chr. 9S0019Hex55-Set III
Chr. 9S0295Fam58-Set III
Chr. 9SW174Tet55-Set I/II
Chr. 9SW749Tet58-Set III
Chr. 9S0024Hex55-Set V
Chr. 9W54Fam63-Set V
Chr. 10S0038Hex62-Set III
Chr. 10SW249Hex55-Set I/II
Chr. 10SW173Tet55-Set I/II
Chr. 10S0070Hex55-Set I/II
Chr. 10SW1041Hex58-Set III
Chr. 10SW951Hex58-Set I/II
Chr. 10SW2067Hex55-Set III
Chr. 10SW1626Tet62-Set V
Chr. 10SW1894Hex58-Set V
Chr. 11S0385Hex55-Set III
Chr. 11SW2008Hex60-Set III
Chr. 11SW435Tet55-Set I/II
Chr. 11S0230Fam55-Set I/II
Chr. 11S0386Tet48-Set I/II
Chr. 11SW2413Fam62-Set IV
Chr. 11S0182Fam55-Set V
Chr. 11SW1377Tet60-Set V
Chr. 12S0143Tet55-Set I/II
Chr. 12S0229Fam58-Set IV
Chr. 12S0106Hex55-Set I/II
Chr. 12SW605Fam55-Set I/II
Chr. 12SWR1021Hex60-Set IV
Chr. 12S0083Hex58-Set V
Chr. 13S0219Hex55-Set I/II
Chr. 13SWR1941Tet62-Set IV
Chr. 13SWr1008Hex62-Set I/II
Chr. 13S0068Tet55-Set I/II
Chr. 13SW225Tet55-Set III
Chr. 13SW398Hex55-Set I/II
Chr. 13SW769Fam55-Set I/II
Chr. 13S0289Fam62-Set V
Chr. 13SW344Tet55-Set V
Chr. 14SW857Hex55-Set I/II
Chr. 14SW295Tet55-Set I/II
Chr. 14SW210Fam55-Set I/II
Chr. 14S0007Hex55-Set I/II
Chr. 14SW761Tet60-Set III
Chr. 14SW1557Tet58-Set III
Chr. 14SW2515Fam55-Set I/II
Chr. 14SW77Hex62-Set V
Chr. 15S0355Fam55-Set I/II
Chr. 15SW1204Hex58-Set III
Chr. 15S0004Hex55-Set III
Chr. 15SW1111Tet55-Set I/II
Chr. 15S0088Tet58-Set IV
Chr. 15SW936Fam58-Set I/II
Chr. 15SW906Tet55-Set I/II
Chr. 16SW742Hex60-Set III
Chr. 16S0006Tet58-Set III
Chr. 16S0298Tet60-Set III
Chr. 16S0026Hex55-Set I/II
Chr. 16S0061Hex55-Set I/II
Chr. 17SWr1004Fam60-Set I/II
Chr. 17SW24Tet58-Set I/II
Chr. 17S0296Fam55-Set I/II
Chr. 17SW840Fam53-Set I/II
Chr. 17S0014Tet60-Set III
Chr. 18SW1023Fam55-Set I/II
Chr. 18SW787Fam55-Set I/II
Chr. 18S0120Fam58-Set III
Chr. 18SWR414Tet55-Set IV
Chr. XSW2476Hex62-Set III
Chr. XSW707Hex55-Set I/II
Chr. XSW1943Tet62-Set V
Chr. XSWR1861Hex50-Set V


The suggested multiplex groups are based on information kindly provided by Rohrer et al. "Mapping 28 erythrocyte antigen, plasma protein and enzyme polymorphisms using an efficient genomic scan of the porcine genome" (Animal Genetics, 28:323-330).

© 2003-2022 USA · USDA · NAGRP · Bioinformatics Coordination Program.
Contact: NAGRP Bioinformatics Team