groupget

Returns the linkage group from its group number.

Synopsis :

The CarthaGene groupget command is invoked as either one of :

• groupget Options
• groupget GrID

Description :

groupget returns a linkage group as a list of markers from its group number (or so-called Group ID). The command group must have been claled before hand to compute these groups.

Arguments :

• Options: -u to obtain the synopsys of the normal use, -h to print a one line description, -H to print a short help.
• GrID: the number of the group to return.

Returns :

The contents of the linkage group as a list of markers.

Example :

CG> dsload Data/rh.cg
{1 haploid RH 53 118 /homes/thomas/carthagene/test/Data/rh.cg}
CG> group 0.3 3

Linkage Groups :
---------------:
LOD threshold=3.00
Distance threshold=30.00:

 Group ID : Marker ID List ...
        1 : 52
        2 : 42 48 47 45 46 44 43
        3 : 41
        4 : 38
        5 : 37 39
        6 : 36 40
        7 : 35
        8 : 25
        9 : 22
       10 : 19 32 31 28 30 27 26 20 21
       11 : 13 14
       12 : 11 12
       13 : 10 15 16 18 17
       14 : 7
       15 : 6 51 8 53 50 9
       16 : 4 34 33 24 23 5
       17 : 3 29
       18 : 2 49
       19 : 1
19
CG> groupget 10
19 32 31 28 30 27 26 20 21
CG> mrkselset [groupget 10]

CG> sem

Map -1 : log10-likelihood =  -161.87
-------:
 Set : Marker List ...
   1 : G5 G18 G17 G14 G16 G13 G12 G6 G7

See also :

• group (2.3.18)