Subsections


squeeze

Expunge step by step non reliable loci from an initial map.

Synopsis:

The squeeze command is invoked either as:

Description:

squeeze command provides a procedure to remove step by step non reliable loci from a map. The command starts from the best map stored inside the heap. Then it tests the removal of a single marker. Each marker is removed separately. If the shortest map is significatively shorter than the inital map according to a distance threshold in cMorgan (Haldane distance) for genetics data or cRay for Radiation Hybrids data, the marker is definitively removed. And the procedure is restarted. The default threshold is 50 cM/cR. In the case of multiple datasets merged with dsmergor, the distance is evaluated for each dataset separatetly and the marker is removed if at least one distance is greater than or equal to the corresponding distance threshold. At each restart, a command tries to disturb the current order of the markers keeped so far. The default command that tries to disturb the order is: {flips 3 0 2}. To change this, you need to provide a second parameter. It has to be a regular carthagene command stored inside a list.

Arguments :

Returns:

nothing.

Example:

# load two datasets and find markers which appear in linkage groups
# of size greater than 4 in the two datasets
CG> set mrkselection [multigroup 4 {0.5 0.5} {6 6} {Data/panelRH1.id Data/p...

Linkage Groups :
---------------:
LOD threshold=6.00
Distance threshold=50.00:

 Group ID : Marker ID List ...
        1 : 151
        2 : 125
        3 : 93
        4 : 15
        5 : 4 36 60 73 79 104 118 123 138 150 161 160 159 158 157 156 155 1...
        6 : 1 10 3 2

Linkage Groups :
---------------:
LOD threshold=6.00
Distance threshold=50.00:

 Group ID : Marker ID List ...
        1 : 151
        2 : 149
        3 : 123
        4 : 122 129 130 131 127 128 126 125 124 137 140 145 146 144 143 142...
        5 : 121
        6 : 119 120
        7 : 118
        8 : 116
        9 : 115 117
       10 : 110 114 113 112 111
       11 : 102
       12 : 93
       13 : 80 81 85 92 100 106 103 105 104 101 99 97 96 95 94 91 98 90 89 ...
       14 : 79
       15 : 74 78 77 76 75
       16 : 73
       17 : 59 63 69 72 71 68 67 66 65 64 62 61 60 70
       18 : 58
       19 : 46 55 57 56 54 53 52 51 50 49 48 47
       20 : 41 45 44 43 42
       21 : 40
       22 : 35 36 37 39 38
       23 : 30 31
       24 : 11 15 20 28 33 32 29 24 27 26 25 23 22 21 19 18 17 14 16 13 12 34
       25 : 10
       26 : 4 9 8 7 6 5
       27 : 1 3 2
122 129 130 131 127 128 126 124 137 140 145 146 144 143 142 141 139 138 136...
CG>

# merge the two panels
CG> dsmergor 1 2
{3 merged by order 161 273}
CG>

# set the current selection of markers
CG> mrkselset $mrkselection

CG>

# remove double markers
CG> mrkdouble

Possible double markers:

                  4 = 5               [45.9]


CG> mrkmerges
Markers 4 and 5 merged in 4.

CG>

# find a good map
CG> lkhn 1 -1
[-2693.73]
Best map with log10-likelihood = -2693.73
TSP: optimum= 2612.586000 lowerbound= 2610.091410 gap= 0.095575% totaltime=...

Map -1 : log10-likelihood = -2693.73
-------:
 Set : Marker List ...
   1 : 9 8 7 6 4 11 13 12 14 17 16 18 19 20 21 22 23 24 27 25 26 28 29 32 3...
   2 : 9 8 7 6 4 11 13 12 14 17 16 18 19 20 21 22 23 24 27 25 26 28 29 32 3...

CG>

# remove dubious markers
CG> squeeze {50 60} {lkhn 1 -1}


Those loci have been removed : 122 37 105 114 98
The best map is now :

Map  0 : log10-likelihood = -2561.26
-------:
 Set : Marker List ...
   1 : 9 8 7 6 4 11 13 12 14 17 16 18 19 20 21 22 23 24 27 25 26 28 29 32 3...
   2 : 9 8 7 6 4 11 13 12 14 17 16 18 19 20 21 22 23 24 27 25 26 28 29 32 3...

CG> bestprintd

Map  0 : log10-likelihood = -2561.26, log-e-likelihood = -5897.52
-------:

Data Set Number  1 :

               Markers Distance      Cumulative   Theta        2pt
 Pos  Id name                                   (%%age)       LOD

  1   9   9            19.0 cR        0.0 cR     17.3 %%      14.9
  2   8   8             0.0 cR       19.0 cR      0.0 %%      18.6
  3   7   7            24.4 cR       19.0 cR     21.7 %%      12.1
  4   6   6            20.4 cR       43.5 cR     18.4 %%      10.0
  5   5   5             0.0 cR       63.8 cR      0.0 %%     ------
  5   4   4            19.8 cR       63.8 cR     18.0 %%      12.3
  6  11  11            21.1 cR       83.6 cR     19.1 %%      12.0
  7  13  13            17.4 cR      104.8 cR     16.0 %%      10.6
  8  12  12            19.1 cR      122.2 cR     17.4 %%       7.5
  9  14  14            35.1 cR      141.2 cR     29.6 %%       5.7
 10  17  17             3.8 cR      176.3 cR      3.8 %%      15.9
 11  16  16             0.0 cR      180.2 cR      0.0 %%      19.3
 12  18  18             3.5 cR      180.2 cR      3.4 %%      15.9
 13  19  19             0.0 cR      183.6 cR      0.0 %%      17.0
 14  20  20             7.0 cR      183.6 cR      6.7 %%      14.6
 15  21  21             7.0 cR      190.6 cR      6.7 %%      15.3
 16  22  22             8.6 cR      197.6 cR      8.3 %%      13.2
 17  23  23             4.4 cR      206.2 cR      4.3 %%      13.7
 18  24  24            13.5 cR      210.6 cR     12.6 %%      10.7
 19  27  27            11.0 cR      224.1 cR     10.4 %%      12.2
 20  25  25             7.1 cR      235.1 cR      6.9 %%      14.7
 21  26  26            15.2 cR      242.2 cR     14.1 %%      11.3
 22  28  28             7.3 cR      257.4 cR      7.0 %%      14.4
 23  29  29             0.0 cR      264.7 cR      0.0 %%      17.0
 24  32  32             3.5 cR      264.7 cR      3.4 %%      16.7
 25  33  33             3.5 cR      268.1 cR      3.4 %%      16.7
 26  34  34            29.8 cR      271.6 cR     25.7 %%       7.2
 27  35  35            25.3 cR      301.4 cR     22.3 %%       7.7
 28  36  36            19.3 cR      326.6 cR     17.5 %%       9.7
 29  38  38            30.4 cR      345.9 cR     26.2 %%       5.4
 30  39  39            33.2 cR      376.3 cR     28.2 %%       3.0
 31  44  44            45.1 cR      409.5 cR     36.3 %%       3.7
 32  41  41            26.1 cR      454.6 cR     23.0 %%      10.1
 33  42  42             6.8 cR      480.7 cR      6.6 %%      15.9
 34  43  43             3.3 cR      487.6 cR      3.3 %%      17.9
 35  45  45             7.8 cR      490.9 cR      7.5 %%      15.1
 36  46  46            16.3 cR      498.7 cR     15.0 %%      12.4
 37  49  49            10.1 cR      515.0 cR      9.6 %%      13.3
 38  51  51             3.2 cR      525.1 cR      3.2 %%      17.8
 39  50  50             0.0 cR      528.3 cR      0.0 %%      21.7
 40  47  47             0.0 cR      528.3 cR      0.0 %%      21.7
 41  48  48             0.0 cR      528.3 cR      0.0 %%      21.7
 42  52  52             0.0 cR      528.3 cR      0.0 %%      21.0
 43  53  53             3.2 cR      528.3 cR      3.2 %%      17.1
 44  54  54             6.4 cR      531.5 cR      6.2 %%      15.7
 45  55  55            37.9 cR      538.0 cR     31.5 %%       7.6
 46  56  56            12.2 cR      575.9 cR     11.5 %%      10.6
 47  57  57            39.2 cR      588.0 cR     32.5 %%       7.7
 48  59  59            51.6 cR      627.3 cR     40.3 %%       6.6
 49  60  60            12.5 cR      678.8 cR     11.7 %%      12.0
 50  64  64            29.1 cR      691.3 cR     25.2 %%       8.8
 51  63  63            22.6 cR      720.4 cR     20.3 %%      12.7
 52  61  61             5.9 cR      743.0 cR      5.7 %%      19.4
 53  62  62            11.0 cR      748.9 cR     10.4 %%      14.8
 54  65  65            13.5 cR      759.9 cR     12.6 %%      13.1
 55  66  66            22.7 cR      773.4 cR     20.3 %%      11.5
 56  69  69            10.7 cR      796.2 cR     10.1 %%      14.2
 57  71  71             6.5 cR      806.8 cR      6.3 %%      15.4
 58  72  72            16.4 cR      813.3 cR     15.1 %%      15.5
 59  70  70             3.6 cR      829.6 cR      3.5 %%      19.9
 60  68  68            37.3 cR      833.2 cR     31.1 %%       6.3
 61  67  67            46.2 cR      870.5 cR     37.0 %%       4.1
 62  77  77            37.8 cR      916.6 cR     31.5 %%       7.7
 63  75  75             0.0 cR      954.4 cR      0.0 %%      22.1
 64  76  76             6.1 cR      954.4 cR      5.9 %%      18.5
 65  78  78            16.4 cR      960.5 cR     15.1 %%      14.4
 66  74  74            43.3 cR      976.9 cR     35.1 %%       8.1
 67  80  80            35.8 cR     1020.2 cR     30.1 %%       7.7
 68  81  81            14.0 cR     1056.1 cR     13.0 %%      12.4
 69  82  82             3.1 cR     1070.0 cR      3.1 %%      19.6
 70  83  83            29.4 cR     1073.2 cR     25.5 %%       9.4
 71  84  84            19.9 cR     1102.6 cR     18.0 %%      10.9
 72  85  85            17.4 cR     1122.5 cR     15.9 %%      12.9
 73  86  86            10.5 cR     1139.8 cR     10.0 %%      17.3
 74  88  88            35.8 cR     1150.3 cR     30.1 %%       8.7
 75  87  87            18.7 cR     1186.1 cR     17.1 %%       9.0
 76  89  89            21.8 cR     1204.8 cR     19.6 %%       9.6
 77  90  90            37.3 cR     1226.6 cR     31.1 %%       9.2
 78  91  91             3.4 cR     1263.9 cR      3.4 %%      19.8
 79  92  92            27.3 cR     1267.3 cR     23.9 %%      10.7
 80  94  94            29.4 cR     1294.6 cR     25.5 %%       9.6
 81  95  95             0.0 cR     1324.0 cR      0.0 %%      19.0
 82  96  96            20.7 cR     1324.1 cR     18.7 %%      13.3
 83  97  97             9.4 cR     1344.7 cR      8.9 %%      17.4
 84  99  99             0.0 cR     1354.1 cR      0.0 %%      21.5
 85 100 100             3.1 cR     1354.1 cR      3.0 %%      18.9
 86 101 101            24.3 cR     1357.2 cR     21.6 %%      11.7
 87 104 104            10.1 cR     1381.5 cR      9.6 %%      14.0
 88 103 103            20.6 cR     1391.6 cR     18.6 %%       9.5
 89 106 106             7.6 cR     1412.3 cR      7.3 %%      15.1
 90 107 107             3.2 cR     1419.8 cR      3.1 %%      19.1
 91 109 109             0.0 cR     1423.0 cR      0.0 %%      21.7
 92 108 108             0.0 cR     1423.0 cR      0.0 %%      21.7
 93 111 111             3.2 cR     1423.1 cR      3.1 %%      19.1
 94 113 113            10.1 cR     1426.2 cR      9.6 %%      14.0
 95 112 112             6.6 cR     1436.4 cR      6.4 %%      15.8
 96 110 110            76.2 cR     1442.9 cR     53.3 %%       3.9
 97 124 124            24.9 cR     1519.1 cR     22.1 %%       9.6
 98 126 126            18.3 cR     1544.1 cR     16.7 %%       8.9
 99 127 127            49.8 cR     1562.4 cR     39.2 %%       4.1
100 129 129            18.8 cR     1612.1 cR     17.1 %%       8.9
101 128 128            24.9 cR     1630.9 cR     22.1 %%       7.3
102 130 130            11.1 cR     1655.8 cR     10.5 %%       9.8
103 131 131            36.0 cR     1666.9 cR     30.2 %%       6.5
104 134 134            14.2 cR     1702.9 cR     13.3 %%      12.4
105 133 133            16.9 cR     1717.2 cR     15.5 %%       8.1
106 136 136            25.2 cR     1734.0 cR     22.3 %%       7.5
107 138 138            16.7 cR     1759.2 cR     15.4 %%      12.9
108 141 141             5.0 cR     1775.9 cR      4.9 %%      15.5
109 139 139            12.3 cR     1780.9 cR     11.6 %%      13.9
110 140 140             0.0 cR     1793.2 cR      0.0 %%      22.7
111 142 142             0.0 cR     1793.2 cR      0.0 %%      22.7
112 135 135             0.0 cR     1793.2 cR      0.0 %%      22.7
113 137 137             3.1 cR     1793.2 cR      3.0 %%      20.1
114 132 132            33.1 cR     1796.3 cR     28.2 %%      10.7
115 143 143             8.6 cR     1829.4 cR      8.2 %%      19.2
116 145 145             2.9 cR     1838.0 cR      2.8 %%      20.7
117 144 144            11.9 cR     1840.9 cR     11.2 %%      16.3
118 146 146             6.4 cR     1852.8 cR      6.2 %%      19.7
119 148 148            22.6 cR     1859.2 cR     20.2 %%      13.3
120 152 152            16.6 cR     1881.8 cR     15.3 %%      12.6
121 154 154             9.4 cR     1898.3 cR      9.0 %%      15.7
122 159 159            14.1 cR     1907.8 cR     13.2 %%      16.9
123 160 160             0.0 cR     1921.9 cR      0.0 %%      26.5
124 161 161            13.9 cR     1921.9 cR     13.0 %%      16.8
125 157 157             8.4 cR     1935.8 cR      8.1 %%      18.7
126 158 158             8.3 cR     1944.3 cR      8.0 %%      19.1
127 155 155            14.2 cR     1952.6 cR     13.3 %%      16.9
128 156 156            14.6 cR     1966.8 cR     13.5 %%      17.1
129 153 153            12.9 cR     1981.4 cR     12.1 %%      16.7
130 150 150            18.1 cR     1994.2 cR     16.6 %%      13.5
131 147 147          ---------
                     2012.3 cR


       131 markers, log10-likelihood =  -836.64
                   log-e-likelihood = -1926.44
                   retention proba. =     0.21

Data Set Number  2 :

               Markers Distance      Cumulative   Theta        2pt
 Pos  Id name                                   (%%age)       LOD

  1   9   9            29.5 cR        0.0 cR     25.6 %%       9.0
  2   8   8             9.0 cR       29.5 cR      8.6 %%      14.0
  3   7   7            24.6 cR       38.6 cR     21.8 %%      11.3
  4   6   6             8.1 cR       63.1 cR      7.8 %%      18.9
  5   5   5             0.0 cR       71.3 cR      0.0 %%     ------
  5   4   4            80.6 cR       71.3 cR     55.3 %%       2.7
  6  11  11            24.6 cR      151.9 cR     21.8 %%      10.4
  7  13  13            10.9 cR      176.5 cR     10.3 %%      17.0
  8  12  12            37.8 cR      187.4 cR     31.5 %%       6.3
  9  14  14            28.7 cR      225.2 cR     24.9 %%       9.0
 10  17  17            11.8 cR      253.9 cR     11.1 %%      20.5
 11  16  16             8.4 cR      265.6 cR      8.0 %%      23.3
 12  18  18            15.6 cR      274.0 cR     14.4 %%      18.7
 13  19  19            10.3 cR      289.6 cR      9.8 %%      20.6
 14  20  20             4.8 cR      299.9 cR      4.7 %%      25.3
 15  21  21            25.9 cR      304.7 cR     22.8 %%      13.9
 16  22  22             0.0 cR      330.6 cR      0.0 %%      22.3
 17  23  23            15.3 cR      330.6 cR     14.2 %%      12.3
 18  24  24            15.3 cR      345.9 cR     14.2 %%      12.4
 19  27  27            14.3 cR      361.3 cR     13.3 %%      15.3
 20  25  25             2.6 cR      375.6 cR      2.6 %%      20.4
 21  26  26            16.6 cR      378.2 cR     15.3 %%      14.4
 22  28  28            40.3 cR      394.8 cR     33.2 %%       7.6
 23  29  29            17.8 cR      435.1 cR     16.3 %%      11.3
 24  32  32            32.8 cR      452.9 cR     28.0 %%       9.8
 25  33  33            14.7 cR      485.7 cR     13.7 %%      17.0
 26  34  34            55.8 cR      500.4 cR     42.8 %%       7.2
 27  35  35            26.2 cR      556.2 cR     23.0 %%      11.3
 28  36  36            22.9 cR      582.4 cR     20.4 %%       9.6
 29  38  38            18.0 cR      605.3 cR     16.4 %%       9.2
 30  39  39            97.6 cR      623.2 cR     62.3 %%       0.4
 31  44  44            26.1 cR      720.9 cR     23.0 %%       9.4
 32  41  41             5.2 cR      747.0 cR      5.1 %%      21.0
 33  42  42             2.5 cR      752.2 cR      2.5 %%      23.3
 34  43  43             5.2 cR      754.7 cR      5.1 %%      21.0
 35  45  45            54.3 cR      759.9 cR     41.9 %%       7.2
 36  46  46            15.4 cR      814.2 cR     14.2 %%      22.1
 37  49  49            15.1 cR      829.6 cR     14.0 %%      22.8
 38  51  51            12.2 cR      844.7 cR     11.5 %%      21.1
 39  50  50             7.3 cR      856.9 cR      7.0 %%      22.4
 40  47  47             9.9 cR      864.1 cR      9.5 %%      20.5
 41  48  48            30.6 cR      874.1 cR     26.3 %%       9.3
 42  52  52            35.1 cR      904.6 cR     29.6 %%       8.4
 43  53  53            14.0 cR      939.8 cR     13.1 %%      19.5
 44  54  54            22.1 cR      953.8 cR     19.8 %%      19.8
 45  55  55            42.1 cR      975.9 cR     34.4 %%      13.9
 46  56  56             2.3 cR     1018.0 cR      2.3 %%      30.6
 47  57  57            62.1 cR     1020.4 cR     46.2 %%      10.0
 48  59  59            34.5 cR     1082.4 cR     29.2 %%      15.8
 49  60  60            25.5 cR     1117.0 cR     22.5 %%      14.0
 50  64  64            25.5 cR     1142.5 cR     22.5 %%      14.0
 51  63  63            15.5 cR     1168.1 cR     14.4 %%      24.0
 52  61  61             2.8 cR     1183.6 cR      2.8 %%      31.4
 53  62  62            27.4 cR     1186.4 cR     24.0 %%      17.1
 54  65  65            16.6 cR     1213.8 cR     15.3 %%      21.5
 55  66  66            30.0 cR     1230.4 cR     26.0 %%      16.4
 56  69  69             9.4 cR     1260.5 cR      9.0 %%      24.5
 57  71  71            40.7 cR     1269.9 cR     33.4 %%      10.3
 58  72  72            46.3 cR     1310.5 cR     37.1 %%       5.4
 59  70  70            36.8 cR     1356.9 cR     30.8 %%       7.6
 60  68  68            13.4 cR     1393.6 cR     12.6 %%      17.9
 61  67  67            93.5 cR     1407.0 cR     60.7 %%       3.4
 62  77  77            18.6 cR     1500.5 cR     17.0 %%      17.1
 63  75  75            17.7 cR     1519.2 cR     16.2 %%      16.2
 64  76  76            13.7 cR     1536.9 cR     12.8 %%      19.5
 65  78  78            16.0 cR     1550.6 cR     14.8 %%      18.5
 66  74  74            81.7 cR     1566.6 cR     55.8 %%       5.7
 67  80  80            36.9 cR     1648.3 cR     30.8 %%      11.7
 68  81  81            19.2 cR     1685.1 cR     17.4 %%      16.9
 69  82  82            19.1 cR     1704.3 cR     17.4 %%      19.2
 70  83  83            33.4 cR     1723.4 cR     28.4 %%      14.5
 71  84  84            25.9 cR     1756.7 cR     22.8 %%      18.3
 72  85  85            23.5 cR     1782.6 cR     20.9 %%      19.1
 73  86  86             9.5 cR     1806.1 cR      9.1 %%      23.8
 74  88  88            17.7 cR     1815.7 cR     16.2 %%      16.1
 75  87  87            31.2 cR     1833.4 cR     26.8 %%       7.9
 76  89  89             9.4 cR     1864.6 cR      9.0 %%      12.7
 77  90  90            20.1 cR     1874.0 cR     18.2 %%      16.1
 78  91  91             7.6 cR     1894.1 cR      7.3 %%      25.5
 79  92  92            11.8 cR     1901.7 cR     11.1 %%      23.4
 80  94  94             6.9 cR     1913.5 cR      6.7 %%      26.4
 81  95  95            24.9 cR     1920.4 cR     22.0 %%      17.8
 82  96  96            28.6 cR     1945.2 cR     24.9 %%      15.8
 83  97  97            48.0 cR     1973.8 cR     38.1 %%      10.9
 84  99  99             9.6 cR     2021.8 cR      9.1 %%      25.2
 85 100 100             6.4 cR     2031.3 cR      6.2 %%      29.6
 86 101 101            17.2 cR     2037.7 cR     15.8 %%      24.1
 87 104 104            18.0 cR     2054.9 cR     16.5 %%      22.6
 88 103 103            42.3 cR     2072.9 cR     34.5 %%      11.3
 89 106 106            22.3 cR     2115.2 cR     20.0 %%      18.4
 90 107 107            21.9 cR     2137.5 cR     19.7 %%      22.1
 91 109 109            49.4 cR     2159.4 cR     39.0 %%      10.5
 92 108 108            61.2 cR     2208.8 cR     45.8 %%       5.4
 93 111 111            12.2 cR     2270.0 cR     11.4 %%      22.8
 94 113 113             0.0 cR     2282.2 cR      0.0 %%      34.4
 95 112 112            13.0 cR     2282.2 cR     12.2 %%      25.8
 96 110 110           106.3 cR     2295.2 cR     65.4 %%       4.6
 97 124 124             7.7 cR     2401.5 cR      7.4 %%      31.1
 98 126 126             2.8 cR     2409.1 cR      2.8 %%      33.4
 99 127 127            23.5 cR     2412.0 cR     20.9 %%      19.0
100 129 129            11.6 cR     2435.4 cR     11.0 %%      21.8
101 128 128             8.4 cR     2447.0 cR      8.1 %%      23.8
102 130 130            46.4 cR     2455.5 cR     37.2 %%      11.5
103 131 131            12.7 cR     2501.9 cR     11.9 %%      19.5
104 134 134            14.6 cR     2514.6 cR     13.6 %%      16.9
105 133 133            60.2 cR     2529.2 cR     45.2 %%       5.0
106 136 136            39.5 cR     2589.4 cR     32.6 %%       9.5
107 138 138            19.7 cR     2628.9 cR     17.9 %%      15.3
108 141 141            28.2 cR     2648.6 cR     24.6 %%      13.9
109 139 139             4.7 cR     2676.8 cR      4.5 %%      29.8
110 140 140            17.3 cR     2681.5 cR     15.9 %%      20.7
111 142 142            36.6 cR     2698.8 cR     30.6 %%      14.2
112 135 135            17.3 cR     2735.4 cR     15.9 %%      22.8
113 137 137            21.5 cR     2752.7 cR     19.4 %%      22.7
114 132 132            42.0 cR     2774.2 cR     34.3 %%      15.8
115 143 143            25.7 cR     2816.2 cR     22.7 %%      22.1
116 145 145             6.7 cR     2841.9 cR      6.4 %%      30.8
117 144 144            36.1 cR     2848.6 cR     30.3 %%      17.1
118 146 146            31.2 cR     2884.6 cR     26.8 %%      17.4
119 148 148            30.0 cR     2915.8 cR     26.0 %%      14.9
120 152 152            28.8 cR     2945.9 cR     25.0 %%      16.2
121 154 154            29.0 cR     2974.7 cR     25.2 %%      17.6
122 159 159             8.5 cR     3003.7 cR      8.2 %%      28.7
123 160 160            23.3 cR     3012.2 cR     20.8 %%      22.5
124 161 161            32.3 cR     3035.5 cR     27.6 %%      17.9
125 157 157            16.2 cR     3067.7 cR     14.9 %%      22.0
126 158 158            10.8 cR     3083.9 cR     10.3 %%      26.1
127 155 155            15.2 cR     3094.8 cR     14.1 %%      24.1
128 156 156            14.5 cR     3110.0 cR     13.5 %%      25.9
129 153 153            20.8 cR     3124.5 cR     18.8 %%      23.8
130 150 150            87.0 cR     3145.3 cR     58.1 %%       7.1
131 147 147          ---------
                     3232.3 cR


       131 markers, log10-likelihood = -1724.62
                   log-e-likelihood = -3971.08
                   retention proba. =     0.15
0

See also:

Thomas Schiex 2009-10-27