A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
LYN ENSSSCG00000006250 4:78691331-78738720    
LYN ENSSSCG00000011884 13:104386937-104415076    
LYN location ⇒ 4:78692083-78691654   CU407092,CH242-518H24,4:78680536-78719082
(Clone quality: bE518H24 on chr=4; Num_of_Contigs=5; )
LYN location ⇒ 4:78696531-78696397   CU407092,CH242-518H24,4:78680536-78719082
(Clone quality: bE518H24 on chr=4; Num_of_Contigs=5; )
LYN location ⇒ 4:78700577-78700418   CU407092,CH242-518H24,4:78680536-78719082
(Clone quality: bE518H24 on chr=4; Num_of_Contigs=5; )
LYN location ⇒ 4:78705600-78705499   CU407092,CH242-518H24,4:78680536-78719082
(Clone quality: bE518H24 on chr=4; Num_of_Contigs=5; )
LYOX_PIG   ENSSSCG00000014232 2:113568780-113580690   CU928298,CH242-225M8,2:113561484-113585663
(Clone quality: bE225M8 on chr=2; Num_of_Contigs=4; )
LYPD1   ENSSSCG00000015706 15:17922739-17958489   CU487210,CH242-188C18,15:17811139-17969664
(Clone quality: bE188C18 on chr=15; Num_of_Contigs=3; )
LYPD3   ENSSSCG00000003062 6:35027946-35031408   FP102604,CH242-184P4,6:34968039-35068842
(No clone quality info on )
LYPD4   ENSSSCG00000003044 6:34639079-34644403   FP015926,CH242-183C8,6:34614693-34644455
(Clone quality: bE183C8 on chr=6; Num_of_Contigs=15; )
LYPD5   ENSSSCG00000003073 6:35350245-35354566    
LYPD6   ENSSSCG00000015676 15:7491968-7513669   CU915310,CH242-174H6,15:7457917-7555553
(Clone quality: bE174H6 on chr=15; Num_of_Contigs=3; )
LYPD6B   ENSSSCG00000015677 15:7864184-7864339   CU469245,CH242-513M6,15:7863598-7866479
(Clone quality: bE513M6 on chr=15; Num_of_Contigs=23; )
LYPLAL1   ENSSSCG00000010817 10:9045768-9077165    
LYRM1   ENSSSCG00000007853 3:22751123-22772256   CU464004,CH242-258J5,3:22696445-22772283
(Clone quality: bE258J5 on chr=3; Num_of_Contigs=7; )
LYRM5   ENSSSCG00000000560 5:46886703-46892411   FP089548,CH242-231D16,5:46884068-47067651
(Clone quality: bE231D16 on chr=5; Num_of_Contigs=1; )
LYRM7   ENSSSCG00000014265 2:121286342-121342521    
LYSMD1   ENSSSCG00000006633 4:102037176-102047720 CU138569,CH242-265M12,4:101911025-102092543
(Clone quality: bE265M12 on chr=4; Num_of_Contigs=8; ) 		 
LYSMD2   ENSSSCG00000004629 1:125042676-125059238   CU019579,CH242-2K4,1:124966545-125142351
(Clone quality: bE2K4 on chr=1; Num_of_Contigs=2; )
LYSMD3   ENSSSCG00000014154 2:87219984-87230932   CU694873,CH242-282B4,2:87192853-87245570
(Clone quality: bE282B4 on chr=2; Num_of_Contigs=2; )
LYSMD4 ENSSSCG00000004817 1:146231387-146236128   CU570700,CH242-111J23,1:146225036-146237780
(Clone quality: bE111J23 on chr=1; Num_of_Contigs=17; )
LYSMD4 location ⇒ 1:146232657-146232949   CU570700,CH242-111J23,1:146225036-146237780
(Clone quality: bE111J23 on chr=1; Num_of_Contigs=17; )
LYST ENSSSCG00000004140 1:24052003-24081804    
LYST ENSSSCG00000003715 6:75576562-75579921   CU457422,CH242-93P7,6:75565210-75601993
(Clone quality: bE93P7 on chr=6; Num_of_Contigs=5; )
LYST ENSSSCG00000010151 14:56684852-56814160    
LYST ENSSSCG00000014620 9:2498299-2500179   FP085603,CH242-271A15,9:2493238-2521528
(Clone quality: bE271A15 on chr=9; Num_of_Contigs=10; )
LYST ENSSSCG00000017968 12:50169413-50422040    
LYST location ⇒ 14:56731644-56731739   CT990621,CH242-156K13,14:56725608-56749168
(Clone quality: bE156K13 on chr=14; Num_of_Contigs=7; )
LYST location ⇒ 14:56732903-56733054   CT990621,CH242-156K13,14:56725608-56749168
(Clone quality: bE156K13 on chr=14; Num_of_Contigs=7; )
LYST location ⇒ 14:56737458-56737598   CT990621,CH242-156K13,14:56725608-56749168
(Clone quality: bE156K13 on chr=14; Num_of_Contigs=7; )
LYST location ⇒ 14:56742749-56742956   CT990621,CH242-156K13,14:56725608-56749168
(Clone quality: bE156K13 on chr=14; Num_of_Contigs=7; )
LYZ ENSSSCG00000000492 5:32494728-32501113   CU469188,CH242-167B23,5:32489184-32503229
(Clone quality: bE167B23 on chr=5; Num_of_Contigs=22; )
LYZ location ⇒ 5:112031-111896   FP016092,CH242-185O3,5:95796-114895
(Clone quality: bE185O3 on chr=5; Num_of_Contigs=8; )
LYZ location ⇒ 5:157674-157751   FP016092,CH242-185O3,5:146286-160061
(Clone quality: bE185O3 on chr=5; Num_of_Contigs=8; )
LYZ location ⇒ 5:335686-335593   CU861971,CH242-284O6,5:309534-343176
(Clone quality: bE284O6 on chr=5; Num_of_Contigs=9; )
LYZ location ⇒ 5:61338-61221   FP016092,CH242-185O3,5:49191-61348
(Clone quality: bE185O3 on chr=5; Num_of_Contigs=8; )
LYZL4   ENSSSCG00000011279 13:21825227-21832323   CU607093,CH242-384H20,13:21824291-21844514
(Clone quality: bE384H20 on chr=13; Num_of_Contigs=13; )
LYZL6   ENSSSCG00000017321 12:15719424-15726694   FP017135,CH242-165C14,12:15690422-15741042
(Clone quality: bE165C14 on chr=12; Num_of_Contigs=11; )
LZTFL1 ENSSSCG00000011314 13:24388136-24407413    
LZTFL1 location ⇒ 13:24388606-24388145   CU469254,CH242-75A24,13:24378276-24398723
(Clone quality: bE75A24 on chr=13; Num_of_Contigs=4; )
LZTFL1 location ⇒ 13:24391131-24390952   CU469254,CH242-75A24,13:24378276-24398723
(Clone quality: bE75A24 on chr=13; Num_of_Contigs=4; )
LZTFL1 location ⇒ 13:24398481-24398284   CU469254,CH242-75A24,13:24378276-24398723
(Clone quality: bE75A24 on chr=13; Num_of_Contigs=4; )
LZTFL1 location ⇒ 13:24407384-24407241   CU469254,CH242-75A24,13:24398824-24519472
(Clone quality: bE75A24 on chr=13; Num_of_Contigs=4; )
LZTR1   ENSSSCG00000010097 14:51673087-51685452   CU633934,CH242-117H20,14:51553625-51738341
(Clone quality: bE117H20 on chr=14; Num_of_Contigs=1; )
LZTS1   ENSSSCG00000009603 14:4067256-4074466   CT737416,CH242-177M15,14:4002126-4156991
(Clone quality: bE177M15 on chr=14; Num_of_Contigs=1; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-45

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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