A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
TNFRSF10A location ⇒ 1:228874403-228874328   CU618324,CH242-276M24,1:228857825-228880847
(Clone quality: bE276M24 on chr=1; Num_of_Contigs=4; )
TNFRSF10B location ⇒ 14:7151484-7151546   CU468373,CH242-89K24,14:7145126-7189106
(Clone quality: bE89K24 on chr=14; Num_of_Contigs=10; )
TNFRSF10B location ⇒ 14:7280291-7280229   CU326374,CH242-10L19,14:7271329-7369891
(Clone quality: bE10L19 on chr=14; Num_of_Contigs=2; )
TNFRSF10B location ⇒ 14:7532751-7532813   CT990613,CH242-283L3,14:7524679-7574795
(Clone quality: bE283L3 on chr=14; Num_of_Contigs=6; )
TNFRSF11A ENSSSCG00000004898 1:165992452-166024819   CU234199,CH242-216F10,1:165980062-166061275
(Clone quality: bE216F10 on chr=1; Num_of_Contigs=4; )
TNFRSF11A location ⇒ 1:166005839-166005239   CU234199,CH242-216F10,1:165980062-166061275
(Clone quality: bE216F10 on chr=1; Num_of_Contigs=4; )
TNFRSF11B location ⇒ 4:19598429-19597683   CU633166,CH242-127F8,4:19578912-19611312
(Clone quality: bE127F8 on chr=4; Num_of_Contigs=3; )
TNFRSF11B location ⇒ 4:19686408-19687154   CU469008,CH242-30A22,4:19674563-19721713
(Clone quality: bE30A22 on chr=4; Num_of_Contigs=4; )
TNFRSF16 ENSSSCG00000012528 X:81970696-81971031   FP101968,CH242-59P14,X:81955507-81971923
(Clone quality: bE59P14 on chr=X; Num_of_Contigs=3; )
TNFRSF16 ENSSSCG00000017548 12:22987595-23005905    
TNFRSF17 ENSSSCG00000007888 3:27825419-27829389   FP102753,CH242-85B21,3:27808581-27831338
(No clone quality info on )
TNFRSF17 location ⇒ 3:25830-25733   FP102618,CH242-1B21,3:21030-75729
(Clone quality: bE1B21 on chr=3; Num_of_Contigs=5; )
TNFRSF17 location ⇒ 3:35364-35473   FP102618,CH242-1B21,3:21030-75729
(Clone quality: bE1B21 on chr=3; Num_of_Contigs=5; )
TNFRSF17 location ⇒ 3:6480-6601   FP102618,CH242-1B21,3:1-10372
(Clone quality: bE1B21 on chr=3; Num_of_Contigs=5; )
TNFRSF17 location ⇒ 3:6643-6542   FP102618,CH242-1B21,3:1-10372
(Clone quality: bE1B21 on chr=3; Num_of_Contigs=5; )
TNFRSF18 ENSSSCG00000003330 6:42789909-42790049   FP102596,CH242-173K23,6:42789386-42793512
(Clone quality: bE173K23 on chr=6; Num_of_Contigs=10; )
TNFRSF19 location ⇒ 11:1459919-1460101   CU929510,CH242-273A16,11:1455054-1520978
(Clone quality: bE273A16 on chr=11; Num_of_Contigs=4; )
TNFRSF19 location ⇒ 11:1502064-1502186   CU929510,CH242-273A16,11:1455054-1520978
(Clone quality: bE273A16 on chr=11; Num_of_Contigs=4; )
TNFRSF19 location ⇒ 11:1768200-1768078   CU633467,CH242-134D18,11:1741183-1806334
(Clone quality: bE134D18 on chr=11; Num_of_Contigs=6; )
TNFRSF19 location ⇒ 11:1958460-1958642   CU633467,CH242-134D18,11:1947426-1962141
(Clone quality: bE134D18 on chr=11; Num_of_Contigs=6; )
TNFRSF19L location ⇒ 9:7440028-7439822   FP102302,CH242-226L8,9:7438901-7443808
(Clone quality: bE226L8 on chr=9; Num_of_Contigs=9; )
TNFRSF19L location ⇒ 9:7441072-7440906   FP102302,CH242-226L8,9:7438901-7443808
(Clone quality: bE226L8 on chr=9; Num_of_Contigs=9; )
TNFRSF19L location ⇒ 9:7487238-7487408   CU915682,CH242-302I13,9:7484508-7499164
(Clone quality: bE302I13 on chr=9; Num_of_Contigs=7; )
TNFRSF19L location ⇒ 9:7488286-7488492   CU915682,CH242-302I13,9:7484508-7499164
(Clone quality: bE302I13 on chr=9; Num_of_Contigs=7; )
TNFRSF1A ENSSSCG00000000708 5:60337243-60349834    
TNFRSF1A location ⇒ 5:60348819-60349135   CU856072,CH242-98O22,5:60346551-60357101
(Clone quality: bE98O22 on chr=5; Num_of_Contigs=6; )
TNFRSF1A location ⇒ 5:60349263-60349780   CU856072,CH242-98O22,5:60346551-60357101
(Clone quality: bE98O22 on chr=5; Num_of_Contigs=6; )
TNFRSF1A location ⇒ 5:60349833-60349884   CU856072,CH242-98O22,5:60346551-60357101
(Clone quality: bE98O22 on chr=5; Num_of_Contigs=6; )
TNFRSF1A location ⇒ 5:60349879-60350211   CU856072,CH242-98O22,5:60346551-60357101
(Clone quality: bE98O22 on chr=5; Num_of_Contigs=6; )
TNFRSF1B location ⇒ 14:141378002-141378221   CU468571,CH242-517H7,14:141369324-141382309
(Clone quality: bE517H7 on chr=14; Num_of_Contigs=17; )
TNFRSF21 ENSSSCG00000001727 7:49421019-49465668    
TNFRSF21 location ⇒ 7:49443858-49443638   CU407333,CH242-132D3,7:49432682-49454487
(Clone quality: bE132D3 on chr=7; Num_of_Contigs=9; )
TNFRSF21 location ⇒ 7:49463322-49462824   CU407333,CH242-132D3,7:49454588-49501576
(Clone quality: bE132D3 on chr=7; Num_of_Contigs=9; )
TNFRSF21 location ⇒ 7:49465073-49465007   CU407333,CH242-132D3,7:49454588-49501576
(Clone quality: bE132D3 on chr=7; Num_of_Contigs=9; )
TNFRSF25 location ⇒ 6:45678175-45678914   FP102449,CH242-60I1,6:45665679-45695205
(Clone quality: bE60I1 on chr=6; Num_of_Contigs=6; )
TNFRSF25 location ⇒ 6:45876039-45876778   FP236215,CH242-289B8,6:45871722-45880099
(Clone quality: bE289B8 on chr=6; Num_of_Contigs=13; )
TNFRSF4 ENSSSCG00000003331 6:42795165-42797753   FP102596,CH242-173K23,6:42793613-42821104
(Clone quality: bE173K23 on chr=6; Num_of_Contigs=10; )
TNFRSF4 location ⇒ 9:108497778-108497429   FP102846,CH242-165D11,9:108457150-108509916
(Clone quality: bE165D11 on chr=9; Num_of_Contigs=5; )
TNFRSF4 location ⇒ 9:108499360-108499310   FP102846,CH242-165D11,9:108457150-108509916
(Clone quality: bE165D11 on chr=9; Num_of_Contigs=5; )
TNFRSF4 location ⇒ 9:108516369-108516218   CU855850,CH242-126A23,9:108509917-108517368
(Clone quality: bE126A23 on chr=9; Num_of_Contigs=7; )
TNFRSF5958 location ⇒ 6:33557577-33557617   FP102369,CH242-128M4,6:33522006-33560344
(Clone quality: bE128M4 on chr=6; Num_of_Contigs=3; )
TNFRSF7 ENSSSCG00000000705 5:60215579-60220962   CU633552,CH242-193I18,5:60186767-60298754
(Clone quality: bE193I18 on chr=5; Num_of_Contigs=2; )
TNFRSF7 location ⇒ 5:60216070-60215580   CU633552,CH242-193I18,5:60186767-60298754
(Clone quality: bE193I18 on chr=5; Num_of_Contigs=2; )
TNFRSF7 location ⇒ 5:60217121-60216968   CU633552,CH242-193I18,5:60186767-60298754
(Clone quality: bE193I18 on chr=5; Num_of_Contigs=2; )
TNFRSF7 location ⇒ 5:60220269-60220133   CU633552,CH242-193I18,5:60186767-60298754
(Clone quality: bE193I18 on chr=5; Num_of_Contigs=2; )
TNFRSF7 location ⇒ 5:60220962-60220447   CU633552,CH242-193I18,5:60186767-60298754
(Clone quality: bE193I18 on chr=5; Num_of_Contigs=2; )
TNFRSF8 ENSSSCG00000003437 6:49086313-49093755   FP102316,CH242-204J17,6:49079436-49098258
(Clone quality: bE204J17 on chr=6; Num_of_Contigs=9; )
TNFRSF8 ENSSSCG00000005495 1:268520497-268543333   CU466939,CH242-294C3,1:268496622-268544262
(Clone quality: bE294C3 on chr=1; Num_of_Contigs=9; )
TNFRSF9 ENSSSCG00000003386 6:46287255-46302434    
TNFRSF9 location ⇒ 6:46289866-46289944   FP104566,CH242-221K1,6:46283879-46291204
(Clone quality: bE221K1 on chr=6; Num_of_Contigs=13; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-900, 901-950, 951-1000, 1001-1050, 1051-1100, 1101-1150, 1151-1200, 1201-1250, 1251-1300, 1301-1350, 1351-1400, 1401-1450, 1451-1500, 1501-1550, 1551-1600, 1601-1650, 1651-1700, 1701-1750, 1751-1800, 1801-1850, 1851-8

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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