A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
TPRG1   ENSSSCG00000011812 13:95666070-95770781   CU896615,CH242-183I14,13:95588779-95777625
(Clone quality: bE183I14 on chr=13; Num_of_Contigs=1; )
TPRG1L   ENSSSCG00000003359 6:43680047-43683396   FP102698,CH242-39I24,6:43627875-43737015
(Clone quality: bE39I24 on chr=6; Num_of_Contigs=5; )
TPRKB   ENSSSCG00000008297 3:63643304-63650784   CU463123,CH242-385I3,3:63635986-63650897
(Clone quality: bE385I3 on chr=3; Num_of_Contigs=11; )
TPST1 ENSSSCG00000007737 3:14951759-14952604   FP102616,CH242-199K9,3:14941396-14974633
(Clone quality: bE199K9 on chr=3; Num_of_Contigs=7; )
TPST1 location ⇒ 3:14952236-14951760   FP102616,CH242-199K9,3:14941396-14974633
(Clone quality: bE199K9 on chr=3; Num_of_Contigs=7; )
TPST1 location ⇒ 3:15058138-15058338   FP102616,CH242-199K9,3:15053008-15091156
(Clone quality: bE199K9 on chr=3; Num_of_Contigs=7; )
TPST1 location ⇒ 3:15099611-15099662   FP102616,CH242-199K9,3:15091257-15100837
(Clone quality: bE199K9 on chr=3; Num_of_Contigs=7; )
TPST2   ENSSSCG00000009963 14:44863953-44882431 CT737259,CH242-127E12,14:44858989-45080062
(Clone quality: bE127E12 on chr=14; Num_of_Contigs=2; ) 		 
TPT1 ENSSSCG00000000622 5:57210433-57210965   CU459114,CH242-375L4,5:57201915-57248947
(Clone quality: bE375L4 on chr=5; Num_of_Contigs=4; )
TPT1 ENSSSCG00000000622 5:57210433-57210965   CU459114,CH242-375L4,5:57201915-57248947
(Clone quality: bE375L4 on chr=5; Num_of_Contigs=4; )
TPT1 location ⇒ 5:14445697-14444877   CU633424,CH242-4O24,5:14435312-14464184
(Clone quality: bE4O24 on chr=5; Num_of_Contigs=4; )
TPT1 location ⇒ 5:14445697-14444877   CU633424,CH242-4O24,5:14435312-14464184
(Clone quality: bE4O24 on chr=5; Num_of_Contigs=4; )
TPT1 location ⇒ 5:57210414-57211079   CU459114,CH242-375L4,5:57201915-57248947
(Clone quality: bE375L4 on chr=5; Num_of_Contigs=4; )
TPT1 location ⇒ 5:57210414-57211079   CU459114,CH242-375L4,5:57201915-57248947
(Clone quality: bE375L4 on chr=5; Num_of_Contigs=4; )
TPX2   ENSSSCG00000007235 17:37571040-37594704    
TRA1 ENSSSCG00000000849 5:75619944-75627941   CU457468,CH242-236A7,5:75618918-75633153
(Clone quality: bE236A7 on chr=5; Num_of_Contigs=7; )
TRA1 ENSSSCG00000011690 13:70668942-70698710   CU855852,CH242-90H6,13:70661837-70722848
(Clone quality: bE90H6 on chr=13; Num_of_Contigs=3; )
TRA1 location ⇒ 5:75623404-75623676   CU457468,CH242-236A7,5:75618918-75633153
(Clone quality: bE236A7 on chr=5; Num_of_Contigs=7; )
TRA1 location ⇒ 5:75623958-75624205   CU457468,CH242-236A7,5:75618918-75633153
(Clone quality: bE236A7 on chr=5; Num_of_Contigs=7; )
TRA1 location ⇒ 5:75627528-75627808   CU457468,CH242-236A7,5:75618918-75633153
(Clone quality: bE236A7 on chr=5; Num_of_Contigs=7; )
TRA1 location ⇒ 5:75702515-75702848   CU694703,CH242-278P19,5:75697678-75706066
(Clone quality: bE278P19 on chr=5; Num_of_Contigs=22; )
TRA2A   ENSSSCG00000015387 9:86198792-86211167    
TRA@ location ⇒ 1:124057691-124057637   CU234162,CH242-199G4,1:124009749-124141738
(Clone quality: bE199G4 on chr=1; Num_of_Contigs=2; )
TRABD   ENSSSCG00000000974 5:99860745-99868909    
TRAC ENSSSCG00000003729 6:80171719-80214020   CU019565,CH242-10N23,6:80107005-80257433
(Clone quality: bE10N23 on chr=6; Num_of_Contigs=3; )
TRAF1 ENSSSCG00000005511 1:274524224-274541563   CU571013,CH242-185E21,1:274522615-274555390
(Clone quality: bE185E21 on chr=1; Num_of_Contigs=9; )
TRAF1 location ⇒ 1:274524378-274524251   CU571013,CH242-185E21,1:274522615-274555390
(Clone quality: bE185E21 on chr=1; Num_of_Contigs=9; )
TRAF1 location ⇒ 1:274526450-274526272   CU571013,CH242-185E21,1:274522615-274555390
(Clone quality: bE185E21 on chr=1; Num_of_Contigs=9; )
TRAF1 location ⇒ 1:274528928-274528640   CU571013,CH242-185E21,1:274522615-274555390
(Clone quality: bE185E21 on chr=1; Num_of_Contigs=9; )
TRAF2 ENSSSCG00000009129 8:94802669-94803223   CU928659,CH242-251I11,8:94798741-94825226
(Clone quality: bE251I11 on chr=8; Num_of_Contigs=13; )
TRAF2 ENSSSCG00000005838 1:294218229-294223476    
TRAF2 ENSSSCG00000015889 15:63234458-63286480    
TRAF2 location ⇒ 1:294223404-294223622   FP236151,CH242-517G10,1:294221982-294232427
(Clone quality: bE517G10 on chr=1; Num_of_Contigs=14; )
TRAF2 location ⇒ 1:294223708-294223770   FP236151,CH242-517G10,1:294221982-294232427
(Clone quality: bE517G10 on chr=1; Num_of_Contigs=14; )
TRAF3 ENSSSCG00000004420 1:81057780-81094457    
TRAF3 ENSSSCG00000015615 9:125559220-125650912    
TRAF3 ENSSSCG00000002525 7:130944988-130993025   CT998550,CH242-445C19,7:130928637-130997560
(Clone quality: bE445C19 on chr=7; Num_of_Contigs=6; )
TRAF3 ENSSSCG00000016341 15:130595565-130605939   CU571360,CH242-35A9,15:130590527-130608096
(Clone quality: bE35A9 on chr=15; Num_of_Contigs=19; )
TRAF3 location ⇒ 7:130945562-130945133   CT998550,CH242-445C19,7:130928637-130997560
(Clone quality: bE445C19 on chr=7; Num_of_Contigs=6; )
TRAF3 location ⇒ 7:130946575-130946399   CT998550,CH242-445C19,7:130928637-130997560
(Clone quality: bE445C19 on chr=7; Num_of_Contigs=6; )
TRAF3IP1 ENSSSCG00000016341 15:130595565-130605939   CU571360,CH242-35A9,15:130590527-130608096
(Clone quality: bE35A9 on chr=15; Num_of_Contigs=19; )
TRAF3IP2 ENSSSCG00000004420 1:81057780-81094457    
TRAF3IP2 location ⇒ 1:81057783-81058259   CT997815,CH242-12H3,1:80971084-81066486
(Clone quality: bE12H3 on chr=1; Num_of_Contigs=3; )
TRAF3IP2 location ⇒ 1:81066336-81066452   CT997815,CH242-12H3,1:80971084-81066486
(Clone quality: bE12H3 on chr=1; Num_of_Contigs=3; )
TRAF3IP2 location ⇒ 1:81206603-81206487   CU928753,CH242-47P9,1:81205445-81217231
(Clone quality: bE47P9 on chr=1; Num_of_Contigs=2; )
TRAF3IP2 location ⇒ 1:81215160-81214684   CU928753,CH242-47P9,1:81205445-81217231
(Clone quality: bE47P9 on chr=1; Num_of_Contigs=2; )
TRAF3IP3   ENSSSCG00000015615 9:125559220-125650912    
TRAF4 ENSSSCG00000001961 7:71000026-71042602   CT867954,CH242-216K6,7:70958499-71046494
(Clone quality: bE216K6 on chr=7; Num_of_Contigs=4; )
TRAF4 ENSSSCG00000017775 12:42745640-42747990   FP016171,CH242-62B5,12:42743508-42749566
(Clone quality: bE62B5 on chr=12; Num_of_Contigs=5; )
TRAF4 ENSSSCG00000004775 1:137383759-137396279   CU234165,CH242-252B18,1:137339871-137454558
(Clone quality: bE252B18 on chr=1; Num_of_Contigs=2; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-900, 901-950, 951-1000, 1001-1050, 1051-1100, 1101-1150, 1151-1200, 1201-1250, 1251-1300, 1301-1350, 1351-1400, 1401-1450, 1451-1500, 1501-1550, 1551-1600, 1601-1650, 1651-1700, 1701-1750, 1751-1800, 1801-1850, 1851-8

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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