A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
TRAF4 location ⇒ 12:42745836-42746270   FP016171,CH242-62B5,12:42743508-42749566
(Clone quality: bE62B5 on chr=12; Num_of_Contigs=5; )
TRAF4 location ⇒ 12:42746524-42746683   FP016171,CH242-62B5,12:42743508-42749566
(Clone quality: bE62B5 on chr=12; Num_of_Contigs=5; )
TRAF4 location ⇒ 12:42746766-42746929   FP016171,CH242-62B5,12:42743508-42749566
(Clone quality: bE62B5 on chr=12; Num_of_Contigs=5; )
TRAF4 location ⇒ 12:42747020-42747084   FP016171,CH242-62B5,12:42743508-42749566
(Clone quality: bE62B5 on chr=12; Num_of_Contigs=5; )
TRAF5 ENSSSCG00000015606 9:124194435-124202127    
TRAF5 location ⇒ 14:1086596-1086689   CU407020,CH242-127G5,14:1013971-1134837
(Clone quality: bE127G5 on chr=14; Num_of_Contigs=2; )
TRAF5 location ⇒ 14:1161319-1161404   CU469368,CH242-181M10,14:1134838-1275802
(Clone quality: bE181M10 on chr=14; Num_of_Contigs=3; )
TRAF5 location ⇒ 14:439945-440038   FP102705,CH242-43I16,14:437864-441394
(Clone quality: bE43I16 on chr=14; Num_of_Contigs=15; )
TRAF5 location ⇒ 14:652384-652265   CT956048,CH242-518K8,14:639903-779667
(Clone quality: bE518K8 on chr=14; Num_of_Contigs=2; )
TRAF6 ENSSSCG00000013291 2:23181693-23201454    
TRAF6 ENSSSCG00000016692 18:43317028-43348158    
TRAF6 location ⇒ 2:23187307-23187618 FP102503,CH242-427N16,2:23182179-23199026
(Clone quality: bE427N16 on chr=2; Num_of_Contigs=4; ) 		 
TRAF6 location ⇒ 2:23187307-23187618 FP102503,CH242-427N16,2:23182179-23199026
(Clone quality: bE427N16 on chr=2; Num_of_Contigs=4; ) 		 
TRAF6 location ⇒ 2:23200764-23201438 CU861593,CH242-189L23,2:23199027-23396640
(Clone quality: bE189L23 on chr=2; Num_of_Contigs=5; ) 		 
TRAF6 location ⇒ 2:23200764-23201438 CU861593,CH242-189L23,2:23199027-23396640
(Clone quality: bE189L23 on chr=2; Num_of_Contigs=5; ) 		 
TRAF7   ENSSSCG00000008043 3:36522833-36539465   FP102350,CH242-207G4,3:36503076-36556623
(Clone quality: bE207G4 on chr=3; Num_of_Contigs=8; )
TRAFD1 ENSSSCG00000009886 14:39534268-39550318   CU582807,CH242-322D6,14:39531876-39551019
(Clone quality: bE322D6 on chr=14; Num_of_Contigs=11; )
TRAIN location ⇒ 7:84829674-84829020   CT955972,CH242-231D20,7:84744010-84860439
(Clone quality: bE231D20 on chr=7; Num_of_Contigs=1; )
TRAIN location ⇒ 7:84831499-84831447   CT955972,CH242-231D20,7:84744010-84860439
(Clone quality: bE231D20 on chr=7; Num_of_Contigs=1; )
TRAIN A ENSSSCG00000002134 7:84828922-84831499   CT955972,CH242-231D20,7:84744010-84860439
(Clone quality: bE231D20 on chr=7; Num_of_Contigs=1; )
TRAK1   ENSSSCG00000011276 13:21620351-21624805   CU928734,CH242-406G23,13:21620082-21631089
(Clone quality: bE406G23 on chr=13; Num_of_Contigs=4; )
TRAK2   ENSSSCG00000016104 15:98672201-98701320   CU928282,CH242-38C15,15:98671239-98735021
(Clone quality: bE38C15 on chr=15; Num_of_Contigs=9; )
TRAM1 ENSSSCG00000006193 4:66905754-66936848    
TRAM1 location ⇒ 4:66905764-66906061   CU469060,CH242-76J16,4:66813509-66916821
(Clone quality: bE76J16 on chr=4; Num_of_Contigs=2; )
TRAM1 location ⇒ 4:66928466-66928610 CU179686,CH242-212I9,4:66916822-67099383
(Clone quality: bE212I9 on chr=4; Num_of_Contigs=3; ) 		 
TRAM1 location ⇒ 4:66929115-66929277 CU179686,CH242-212I9,4:66916822-67099383
(Clone quality: bE212I9 on chr=4; Num_of_Contigs=3; ) 		 
TRAM1 location ⇒ 4:66936026-66936212 CU179686,CH242-212I9,4:66916822-67099383
(Clone quality: bE212I9 on chr=4; Num_of_Contigs=3; ) 		 
TRAM2   ENSSSCG00000002621 7:135457028-135536668    
TRAP ENSSSCG00000001022 7:4633365-4654265   CU469365,CH242-149A19,7:4528264-4656133
(Clone quality: bE149A19 on chr=7; Num_of_Contigs=3; )
TRAP ENSSSCG00000005364 1:250807805-250875573   CU407125,CH242-372M9,1:250708340-250913158
(Clone quality: bE372M9 on chr=1; Num_of_Contigs=1; )
TRAP ENSSSCG00000006501 4:97957239-97968450   CU151868,CH242-286M6,4:97945564-98074701
(Clone quality: bE286M6 on chr=4; Num_of_Contigs=4; )
TRAP ENSSSCG00000009404 11:18973025-18980781   FP085602,CH242-266M16,11:18971338-18989709
(Clone quality: bE266M16 on chr=11; Num_of_Contigs=8; )
TRAP1 ENSSSCG00000007952 3:34573763-34602224    
TRAP1 location ⇒ 3:34573837-34574005   FP067388,CH242-65E7,3:34561004-34592181
(Clone quality: bE65E7 on chr=3; Num_of_Contigs=5; )
TRAP1 location ⇒ 3:34580584-34580746   FP067388,CH242-65E7,3:34561004-34592181
(Clone quality: bE65E7 on chr=3; Num_of_Contigs=5; )
TRAP1 location ⇒ 3:34590100-34590289   FP067388,CH242-65E7,3:34561004-34592181
(Clone quality: bE65E7 on chr=3; Num_of_Contigs=5; )
TRAP1 location ⇒ 3:34601978-34602221   CU914336,CH242-210P22,3:34597748-34618882
(Clone quality: bE210P22 on chr=3; Num_of_Contigs=7; )
TRAPPC2   ENSSSCG00000012124 X:9467114-9478991 CU633939,CH242-187N24,X:9427527-9513452
(Clone quality: bE187N24 on chr=X; Num_of_Contigs=4; ) 		 
TRAPPC2L   ENSSSCG00000002646 6:380948-384224    
TRAPPC3   ENSSSCG00000003638 6:62696509-62707095   CU929602,CH242-252C17,6:62679016-62720758
(Clone quality: bE252C17 on chr=6; Num_of_Contigs=6; )
TRAPPC4 ENSSSCG00000015104 9:44832756-44836873   CU695209,CH242-241K21,9:44763573-44853404
(Clone quality: bE241K21 on chr=9; Num_of_Contigs=5; )
TRAPPC4 ENSSSCG00000015104 9:44832756-44836873   CU695209,CH242-241K21,9:44763573-44853404
(Clone quality: bE241K21 on chr=9; Num_of_Contigs=5; )
TRAPPC4 location ⇒ 9:44833051-44833230   CU695209,CH242-241K21,9:44763573-44853404
(Clone quality: bE241K21 on chr=9; Num_of_Contigs=5; )
TRAPPC4 location ⇒ 9:44833394-44833571   CU695209,CH242-241K21,9:44763573-44853404
(Clone quality: bE241K21 on chr=9; Num_of_Contigs=5; )
TRAPPC4 location ⇒ 9:44834586-44834680   CU695209,CH242-241K21,9:44763573-44853404
(Clone quality: bE241K21 on chr=9; Num_of_Contigs=5; )
TRAPPC4 location ⇒ 9:44835574-44835705   CU695209,CH242-241K21,9:44763573-44853404
(Clone quality: bE241K21 on chr=9; Num_of_Contigs=5; )
TRAPPC5   ENSSSCG00000013573 2:51015720-51016286   CU929919,CH242-334A8,2:51013584-51060863
(Clone quality: bE334A8 on chr=2; Num_of_Contigs=7; )
TRAPPC6B   ENSSSCG00000004986 1:177636397-177729090    
TRAPPC9   ENSSSCG00000005934 4:1712609-2190793    
TRAT1 ENSSSCG00000011938 13:112034441-112056638   CU633542,CH242-152C22,13:112028631-112094318
(Clone quality: bE152C22 on chr=13; Num_of_Contigs=5; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-900, 901-950, 951-1000, 1001-1050, 1051-1100, 1101-1150, 1151-1200, 1201-1250, 1251-1300, 1301-1350, 1351-1400, 1401-1450, 1451-1500, 1501-1550, 1551-1600, 1601-1650, 1651-1700, 1701-1750, 1751-1800, 1801-1850, 1851-8

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

© 2003-2025: USA · USDA · NRPSP8 · Program to Accelerate Animal Genomics Applications. Contact: Bioinformatics Team