A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
TRAT1 location ⇒ 13:112034979-112034823   CU633542,CH242-152C22,13:112028631-112094318
(Clone quality: bE152C22 on chr=13; Num_of_Contigs=5; )
TRAT1 location ⇒ 13:112039962-112039871   CU633542,CH242-152C22,13:112028631-112094318
(Clone quality: bE152C22 on chr=13; Num_of_Contigs=5; )
TRAT1 location ⇒ 13:112056643-112056533   CU633542,CH242-152C22,13:112028631-112094318
(Clone quality: bE152C22 on chr=13; Num_of_Contigs=5; )
TRAT1 location ⇒ 13:112068952-112068868   CU633542,CH242-152C22,13:112028631-112094318
(Clone quality: bE152C22 on chr=13; Num_of_Contigs=5; )
TRB location ⇒ 18:6242937-6242893   CU655925,CH242-295C16,18:6237421-6243824
(Clone quality: bE295C16 on chr=18; Num_of_Contigs=15; )
TRB location ⇒ 18:6251893-6251849   CU655925,CH242-295C16,18:6247332-6253534
(Clone quality: bE295C16 on chr=18; Num_of_Contigs=15; )
TRB location ⇒ 18:6253448-6253061   CU655925,CH242-295C16,18:6247332-6253534
(Clone quality: bE295C16 on chr=18; Num_of_Contigs=15; )
TRB location ⇒ 18:6261982-6261938   CU655925,CH242-295C16,18:6253635-6262172
(Clone quality: bE295C16 on chr=18; Num_of_Contigs=15; )
TRB@ ENSSSCG00000007208 17:36716172-36752493    
TRB@ ENSSSCG00000008623 3:115035691-115056815    
TRBV12-2   ENSSSCG00000016476 18:6315989-6316447   CU655925,CH242-295C16,18:6314137-6332863
(Clone quality: bE295C16 on chr=18; Num_of_Contigs=15; )
TRBV19 ENSSSCG00000016475 18:6251209-6534313    
TRBV19 ENSSSCG00000016479 18:6358640-6359348   CU655925,CH242-295C16,18:6357691-6386430
(Clone quality: bE295C16 on chr=18; Num_of_Contigs=15; )
TRBV30   ENSSSCG00000016474 18:6227996-6228667   CU928245,CH242-100K20,18:6180123-6237420
(Clone quality: bE100K20 on chr=18; Num_of_Contigs=3; )
TRD@ location ⇒ 7:102366-102281   CU657920,CH242-367F14,7:95842-128080
(Clone quality: bE367F14 on chr=7; Num_of_Contigs=10; )
TRD@ location ⇒ 7:4669-4758   CU657920,CH242-367F14,7:1-36410
(Clone quality: bE367F14 on chr=7; Num_of_Contigs=10; )
TRD@ location ⇒ 7:4735-4658   CU657920,CH242-367F14,7:1-36410
(Clone quality: bE367F14 on chr=7; Num_of_Contigs=10; )
TRD@ location ⇒ 7:99704-99789   CU657920,CH242-367F14,7:95842-128080
(Clone quality: bE367F14 on chr=7; Num_of_Contigs=10; )
TRDMT1   ENSSSCG00000011032 10:41732466-41740551   CU915356,CH242-407C23,10:41723355-41741281
(Clone quality: bE407C23 on chr=10; Num_of_Contigs=14; )
TRDN   ENSSSCG00000004231 1:41045898-41050920   CU694551,CH242-15A22,1:41009316-41128317
(Clone quality: bE15A22 on chr=1; Num_of_Contigs=2; )
TREM1 ENSSSCG00000001617 7:41979653-42001160   CU306815,CH242-32N5,7:41973045-42041868
(Clone quality: bE32N5 on chr=7; Num_of_Contigs=10; )
TREM1 location ⇒ 7:41931894-41931520   CU550655,CH242-156C23,7:41927018-41943714
(Clone quality: bE156C23 on chr=7; Num_of_Contigs=10; )
TREM1 location ⇒ 7:41940415-41940055   CU550655,CH242-156C23,7:41927018-41943714
(Clone quality: bE156C23 on chr=7; Num_of_Contigs=10; )
TREM1 location ⇒ 7:41979984-41979610   CU306815,CH242-32N5,7:41973045-42041868
(Clone quality: bE32N5 on chr=7; Num_of_Contigs=10; )
TREM1 location ⇒ 7:41988506-41988146   CU306815,CH242-32N5,7:41973045-42041868
(Clone quality: bE32N5 on chr=7; Num_of_Contigs=10; )
TREM2 ENSSSCG00000001614 7:41921070-41926634   CU550655,CH242-156C23,7:41899634-41926917
(Clone quality: bE156C23 on chr=7; Num_of_Contigs=10; )
TREM2 location ⇒ 7:41921238-41921108   CU550655,CH242-156C23,7:41899634-41926917
(Clone quality: bE156C23 on chr=7; Num_of_Contigs=10; )
TREM2 location ⇒ 7:41921549-41921315   CU550655,CH242-156C23,7:41899634-41926917
(Clone quality: bE156C23 on chr=7; Num_of_Contigs=10; )
TREM2 location ⇒ 7:41924764-41924411   CU550655,CH242-156C23,7:41899634-41926917
(Clone quality: bE156C23 on chr=7; Num_of_Contigs=10; )
TREM2 location ⇒ 7:41926601-41926496   CU550655,CH242-156C23,7:41899634-41926917
(Clone quality: bE156C23 on chr=7; Num_of_Contigs=10; )
TREML1 ENSSSCG00000001613 7:41910767-41915858   CU550655,CH242-156C23,7:41899634-41926917
(Clone quality: bE156C23 on chr=7; Num_of_Contigs=10; )
TREML1 location ⇒ 7:41911321-41910770   CU550655,CH242-156C23,7:41899634-41926917
(Clone quality: bE156C23 on chr=7; Num_of_Contigs=10; )
TREML1 location ⇒ 7:41912769-41912655   CU550655,CH242-156C23,7:41899634-41926917
(Clone quality: bE156C23 on chr=7; Num_of_Contigs=10; )
TREML1 location ⇒ 7:41915595-41915260   CU550655,CH242-156C23,7:41899634-41926917
(Clone quality: bE156C23 on chr=7; Num_of_Contigs=10; )
TREML1 location ⇒ 7:41915853-41915763   CU550655,CH242-156C23,7:41899634-41926917
(Clone quality: bE156C23 on chr=7; Num_of_Contigs=10; )
TREML2 ENSSSCG00000001616 7:41953035-41963145   CU550655,CH242-156C23,7:41946780-41963367
(Clone quality: bE156C23 on chr=7; Num_of_Contigs=10; )
TREML2 location ⇒ 7:41954838-41954535   CU550655,CH242-156C23,7:41946780-41963367
(Clone quality: bE156C23 on chr=7; Num_of_Contigs=10; )
TREML2 location ⇒ 7:41959931-41959608   CU550655,CH242-156C23,7:41946780-41963367
(Clone quality: bE156C23 on chr=7; Num_of_Contigs=10; )
TREML2 location ⇒ 7:41963145-41962917   CU550655,CH242-156C23,7:41946780-41963367
(Clone quality: bE156C23 on chr=7; Num_of_Contigs=10; )
TRG@ ENSSSCG00000016985 16:48475943-48486629   CU928102,CH242-282H22,16:48385360-48486838
(Clone quality: bE282H22 on chr=16; Num_of_Contigs=5; )
TRG@ ENSSSCG00000017106 16:72900438-72908115   CU915407,CH242-304C24,16:72868010-72973211
(Clone quality: bE304C24 on chr=16; Num_of_Contigs=2; )
TRG@ ENSSSCG00000008225 3:53542683-53578492   CU570839,CH242-286N20,3:53540211-53717808
(Clone quality: bE286N20 on chr=3; Num_of_Contigs=1; )
TRH ENSSSCG00000000515 5:35506391-35909930    
TRH ENSSSCG00000011596 13:57837217-57838594   CU856531,CH242-250G6,13:57835750-57838789
(Clone quality: bE250G6 on chr=13; Num_of_Contigs=16; )
TRHDE   ENSSSCG00000000515 5:35506391-35909930    
TRHR   ENSSSCG00000006030 4:28416262-28417059   CU695049,CH242-278E21,4:28412895-28513626
(Clone quality: bE278E21 on chr=4; Num_of_Contigs=2; )
TRI50_PIG   ENSSSCG00000007703 3:9048086-9055766   CU657922,CH242-86I8,3:9021264-9077548
(Clone quality: bE86I8 on chr=3; Num_of_Contigs=6; )
TRIAD3 ENSSSCG00000007587 3:3952543-3969567   FP102569,CH242-151E19,3:3887357-3971939
(Clone quality: bE151E19 on chr=3; Num_of_Contigs=3; )
TRIAP1   ENSSSCG00000009908 14:40550770-40552174    
TRIB2   ENSSSCG00000008623 3:115035691-115056815    
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-900, 901-950, 951-1000, 1001-1050, 1051-1100, 1101-1150, 1151-1200, 1201-1250, 1251-1300, 1301-1350, 1351-1400, 1401-1450, 1451-1500, 1501-1550, 1551-1600, 1601-1650, 1651-1700, 1701-1750, 1751-1800, 1801-1850, 1851-8

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

© 2003-2025: USA · USDA · NRPSP8 · Program to Accelerate Animal Genomics Applications. Contact: Bioinformatics Team