A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
LCN6   ENSSSCG00000005835 1:294192101-294195697   FP236151,CH242-517G10,1:294180904-294209678
(Clone quality: bE517G10 on chr=1; Num_of_Contigs=14; )
LCOR   ENSSSCG00000010511 14:113497250-113503957   CU469002,CH242-26D9,14:113457347-113517099
(Clone quality: bE26D9 on chr=14; Num_of_Contigs=6; )
LCORL   ENSSSCG00000008748 8:9795428-9926092    
LCP1 ENSSSCG00000002113 7:84075224-84094296   CU695044,CH242-25H12,7:84008295-84110215
(Clone quality: bE25H12 on chr=7; Num_of_Contigs=2; )
LCP1 ENSSSCG00000002125 7:84529138-84547893   CU329683,CH242-81B19,7:84496601-84554487
(Clone quality: bE81B19 on chr=7; Num_of_Contigs=1; )
LCP1 ENSSSCG00000009412 11:20509594-20603421    
LCP1 location ⇒ 11:20544497-20544721   CU372901,CH242-216D15,11:20538782-20546324
(Clone quality: bE216D15 on chr=11; Num_of_Contigs=16; )
LCP1 location ⇒ 11:20568626-20568792   CU367850,CH242-196G1,11:20560497-20572791
(Clone quality: bE196G1 on chr=11; Num_of_Contigs=7; )
LCP1 location ⇒ 11:20584357-20584537   CU367850,CH242-196G1,11:20572892-20601509
(Clone quality: bE196G1 on chr=11; Num_of_Contigs=7; )
LCP1 location ⇒ 11:20602932-20603305   CU367850,CH242-196G1,11:20601610-20603879
(Clone quality: bE196G1 on chr=11; Num_of_Contigs=7; )
LCP2 ENSSSCG00000017006 16:50988406-51031260    
LCP2 location ⇒ 16:50988440-50988672   CU915300,CH242-100L14,16:50928442-51005745
(Clone quality: bE100L14 on chr=16; Num_of_Contigs=2; )
LCP2 location ⇒ 16:51009514-51009712   CU915300,CH242-100L14,16:51005846-51108426
(Clone quality: bE100L14 on chr=16; Num_of_Contigs=2; )
LCP2 location ⇒ 16:51028948-51029107   CU915300,CH242-100L14,16:51005846-51108426
(Clone quality: bE100L14 on chr=16; Num_of_Contigs=2; )
LCP2 location ⇒ 16:51030727-51031377   CU915300,CH242-100L14,16:51005846-51108426
(Clone quality: bE100L14 on chr=16; Num_of_Contigs=2; )
LCT   ENSSSCG00000015691 15:14467621-14502529    
LCTL   ENSSSCG00000004947 1:171701257-171714872   CU407297,CH242-524I5,1:171692534-171742222
(Clone quality: bE524I5 on chr=1; Num_of_Contigs=20; )
LDB1   ENSSSCG00000010574 14:118094806-118107003   CT737175,CH242-202A24,14:118086409-118163897
(Clone quality: bE202A24 on chr=14; Num_of_Contigs=4; )
LDB3   ENSSSCG00000010359 14:91425539-91484408   CU468409,CH242-274C9,14:91325473-91504950
(Clone quality: bE274C9 on chr=14; Num_of_Contigs=1; )
LDHA   ENSSSCG00000013366 2:38036308-38047569   CU468483,CH242-329C14,2:38013723-38049196
(Clone quality: bE329C14 on chr=2; Num_of_Contigs=7; )
LDHB_PIG   ENSSSCG00000000576 5:49822469-49839949    
LDHB_PIG   ENSSSCG00000000576 5:49822469-49839949    
LDHC_PIG   ENSSSCG00000013363 2:37842634-37893500    
LDHD   ENSSSCG00000002712 6:9042047-9046116   FP102971,CH242-257N5,6:9041118-9051682
(Clone quality: bE257N5 on chr=6; Num_of_Contigs=16; )
LDLR ENSSSCG00000013628 2:52433429-52437209   FP102365,CH242-142P24,2:52422357-52440708
(Clone quality: bE142P24 on chr=2; Num_of_Contigs=4; )
LDLR ENSSSCG00000015135 9:47037892-47201737    
LDLR location ⇒ 2:52434575-52434679   FP102365,CH242-142P24,2:52422357-52440708
(Clone quality: bE142P24 on chr=2; Num_of_Contigs=4; )
LDLR location ⇒ 2:52435758-52435879   FP102365,CH242-142P24,2:52422357-52440708
(Clone quality: bE142P24 on chr=2; Num_of_Contigs=4; )
LDLR location ⇒ 2:52436821-52437007   FP102365,CH242-142P24,2:52422357-52440708
(Clone quality: bE142P24 on chr=2; Num_of_Contigs=4; )
LDLR location ⇒ 2:52437098-52437207   FP102365,CH242-142P24,2:52422357-52440708
(Clone quality: bE142P24 on chr=2; Num_of_Contigs=4; )
LDLRAD2   ENSSSCG00000003515 6:54954418-54959827    
LDLRAD3   ENSSSCG00000013294 2:23528294-23794824    
LDLRAP1   ENSSSCG00000003549 6:57147605-57169443   CU929753,CH242-280A19,6:57110925-57224647
(Clone quality: bE280A19 on chr=6; Num_of_Contigs=3; )
LDOC1   ENSSSCG00000012718 X:113597135-113597575 FP101991,CH242-127F22,X:113576923-113597747
(Clone quality: bE127F22 on chr=X; Num_of_Contigs=5; ) 		 
LDOC1L   ENSSSCG00000000022 5:1460374-1461093   CU694826,CH242-162H12,5:1451427-1483969
(Clone quality: bE162H12 on chr=5; Num_of_Contigs=5; )
LEAP2 ENSSSCG00000014290 2:123104876-123105893 CU407038,CH242-18J12,2:123020435-123138962
(Clone quality: bE18J12 on chr=2; Num_of_Contigs=6; ) 		 
LEAP2 location ⇒ 2:123104895-123104959 CU407038,CH242-18J12,2:123020435-123138962
(Clone quality: bE18J12 on chr=2; Num_of_Contigs=6; ) 		 
LEAP2 location ⇒ 2:123105157-123105299 CU407038,CH242-18J12,2:123020435-123138962
(Clone quality: bE18J12 on chr=2; Num_of_Contigs=6; ) 		 
LEAP2 location ⇒ 2:123105609-123105871 CU407038,CH242-18J12,2:123020435-123138962
(Clone quality: bE18J12 on chr=2; Num_of_Contigs=6; ) 		 
LECT1   ENSSSCG00000009442 11:25007261-25025006   FP236201,CH242-140F21,11:25001563-25038008
(Clone quality: bE140F21 on chr=11; Num_of_Contigs=6; )
LECT2   ENSSSCG00000014315 2:125546729-125557469   FP089688,CH242-222D16,2:125503932-125628875
(Clone quality: bE222D16 on chr=2; Num_of_Contigs=7; )
LEF1 ENSSSCG00000009148 8:97663451-97777746    
LEF1 location ⇒ 8:97666066-97666200   CU466301,CH242-502J19,8:97664280-97666569
(Clone quality: bE502J19 on chr=8; Num_of_Contigs=7; )
LEF1 location ⇒ 8:97741480-97741613   CU466301,CH242-502J19,8:97679656-97767699
(Clone quality: bE502J19 on chr=8; Num_of_Contigs=7; )
LEF1 location ⇒ 8:97749816-97749941   CU466301,CH242-502J19,8:97679656-97767699
(Clone quality: bE502J19 on chr=8; Num_of_Contigs=7; )
LEF1 location ⇒ 8:97750965-97751127   CU466301,CH242-502J19,8:97679656-97767699
(Clone quality: bE502J19 on chr=8; Num_of_Contigs=7; )
LEFTY2 location ⇒ 10:14017624-14017274   CU914379,CH242-206B3,10:14005937-14028474
(Clone quality: bE206B3 on chr=10; Num_of_Contigs=3; )
LEFTY2 location ⇒ 10:14018649-14018400   CU914379,CH242-206B3,10:14005937-14028474
(Clone quality: bE206B3 on chr=10; Num_of_Contigs=3; )
LEFTY2 location ⇒ 10:14051309-14050992   CU914379,CH242-206B3,10:14028575-14068754
(Clone quality: bE206B3 on chr=10; Num_of_Contigs=3; )
LEFTY2 location ⇒ 10:14055378-14055121   CU914379,CH242-206B3,10:14028575-14068754
(Clone quality: bE206B3 on chr=10; Num_of_Contigs=3; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-45

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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