A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
PCDH15 location ⇒ 14:100648708-100648861 CT737214,CH242-116N18,14:100458229-100652258
(Clone quality: bE116N18 on chr=14; Num_of_Contigs=1; ) 		 
PCDH15 location ⇒ 14:100665461-100665535 CU407218,CH242-373M1,14:100652259-100815328
(Clone quality: bE373M1 on chr=14; Num_of_Contigs=4; ) 		 
PCDH17 ENSSSCG00000009446 11:29515386-29603162    
PCDH17 location ⇒ 11:29517687-29517959   CU302260,CH242-182A24,11:29397855-29563952
(Clone quality: bE182A24 on chr=11; Num_of_Contigs=1; )
PCDH17 location ⇒ 11:29550912-29550973   CU302260,CH242-182A24,11:29397855-29563952
(Clone quality: bE182A24 on chr=11; Num_of_Contigs=1; )
PCDH17 location ⇒ 11:29551106-29551280   CU302260,CH242-182A24,11:29397855-29563952
(Clone quality: bE182A24 on chr=11; Num_of_Contigs=1; )
PCDH17 location ⇒ 11:29602478-29602821   CU062514,CH242-110M22,11:29600344-29663820
(Clone quality: bE110M22 on chr=11; Num_of_Contigs=10; )
PCDH18 ENSSSCG00000009065 8:76523747-76535701   CU468494,CH242-352D19,8:76522147-76540131
(Clone quality: bE352D19 on chr=8; Num_of_Contigs=8; )
PCDH18 location ⇒ 8:76525272-76524570   CU468494,CH242-352D19,8:76522147-76540131
(Clone quality: bE352D19 on chr=8; Num_of_Contigs=8; )
PCDH19 ENSSSCG00000012479 X:75415113-75495406    
PCDH19 location ⇒ X:75424157-75424097   CU463244,CH242-339N13,X:75399598-75441843
(Clone quality: bE339N13 on chr=X; Num_of_Contigs=4; )
PCDH19 location ⇒ X:75490235-75489906   CU463244,CH242-339N13,X:75473475-75495404
(Clone quality: bE339N13 on chr=X; Num_of_Contigs=4; )
PCDH19 location ⇒ X:75493947-75493767   CU463244,CH242-339N13,X:75473475-75495404
(Clone quality: bE339N13 on chr=X; Num_of_Contigs=4; )
PCDH20 location ⇒ 11:33159865-33159362   CU062564,CH242-400M20,11:33157521-33160103
(No clone quality info on )
PCDH21 ENSSSCG00000010348 14:88876118-88898171   CU607038,CH242-240O5,14:88865868-89075009
(Clone quality: bE240O5 on chr=14; Num_of_Contigs=1; )
PCDH21 location ⇒ 14:88780221-88780370   CU633218,CH242-144B15,14:88679736-88865867
(Clone quality: bE144B15 on chr=14; Num_of_Contigs=2; )
PCDH21 location ⇒ 14:88783487-88783654   CU633218,CH242-144B15,14:88679736-88865867
(Clone quality: bE144B15 on chr=14; Num_of_Contigs=2; )
PCDH21 location ⇒ 14:88891199-88891348   CU607038,CH242-240O5,14:88865868-89075009
(Clone quality: bE240O5 on chr=14; Num_of_Contigs=1; )
PCDH21 location ⇒ 14:88894465-88894632   CU607038,CH242-240O5,14:88865868-89075009
(Clone quality: bE240O5 on chr=14; Num_of_Contigs=1; )
PCDH24   ENSSSCG00000014055 2:70338038-70367840 FP101981,CH242-191F5,2:70304317-70501298
(Clone quality: bE191F5 on chr=2; Num_of_Contigs=3; ) 		 
PCDH42 location ⇒ 8:18940874-18941278   CU928437,CH242-318K24,8:18939927-18963610
(Clone quality: bE318K24 on chr=8; Num_of_Contigs=2; )
PCDH42 location ⇒ 8:19096086-19095682   CU582884,CH242-26K3,8:19093821-19096630
(Clone quality: bE26K3 on chr=8; Num_of_Contigs=2; )
PCDH7 location ⇒ 8:18942188-18942247   CU928437,CH242-318K24,8:18939927-18963610
(Clone quality: bE318K24 on chr=8; Num_of_Contigs=2; )
PCDH7 location ⇒ 8:19094775-19094716   CU582884,CH242-26K3,8:19093821-19096630
(Clone quality: bE26K3 on chr=8; Num_of_Contigs=2; )
PCDH7 location ⇒ 8:19148684-19148880   CU463909,CH242-187F6,8:19106893-19227254
(Clone quality: bE187F6 on chr=8; Num_of_Contigs=6; )
PCDH7 location ⇒ 8:19362084-19362501   CU466338,CH242-97E7,8:19359775-19378551
(Clone quality: bE97E7 on chr=8; Num_of_Contigs=1; )
PCDH8 ENSSSCG00000009445 11:27151836-27155805    
PCDH8 location ⇒ 11:27156146-27155587   FP236235,CH242-17B8,11:27154636-27162197
(Clone quality: bE17B8 on chr=11; Num_of_Contigs=6; )
PCDH8 location ⇒ 11:27156379-27156186   FP236235,CH242-17B8,11:27154636-27162197
(Clone quality: bE17B8 on chr=11; Num_of_Contigs=6; )
PCDH9 location ⇒ 11:39194701-39195322   FP102077,CH242-201H8,11:39186720-39215334
(Clone quality: bE201H8 on chr=11; Num_of_Contigs=5; )
PCDH9 location ⇒ 11:39331856-39332477   CU062558,CH242-372L1,11:39324242-39338679
(Clone quality: bE372L1 on chr=11; Num_of_Contigs=15; )
PCDHA location ⇒ 2:129430240-129430451   CU582771,CH242-139E18,2:129424223-129476466
(Clone quality: bE139E18 on chr=2; Num_of_Contigs=14; )
PCDHA location ⇒ 2:129430526-129430926   CU582771,CH242-139E18,2:129424223-129476466
(Clone quality: bE139E18 on chr=2; Num_of_Contigs=14; )
PCDHB1 ENSSSCG00000014377 2:129484237-129486690   CU582771,CH242-139E18,2:129476567-129508714
(Clone quality: bE139E18 on chr=2; Num_of_Contigs=14; )
PCDHB1 location ⇒ 2:129484992-129485680   CU582771,CH242-139E18,2:129476567-129508714
(Clone quality: bE139E18 on chr=2; Num_of_Contigs=14; )
PCDHB10 location ⇒ 2:129938304-129938395   CU855722,CH242-107K9,2:129938191-129949315
(Clone quality: bE107K9 on chr=2; Num_of_Contigs=12; )
PCDHB10 location ⇒ 2:129958994-129959085   CU855722,CH242-107K9,2:129953568-129959136
(Clone quality: bE107K9 on chr=2; Num_of_Contigs=12; )
PCDHB10 location ⇒ 2:129968241-129968332   CU855722,CH242-107K9,2:129959237-129968352
(Clone quality: bE107K9 on chr=2; Num_of_Contigs=12; )
PCDHB10 location ⇒ 2:129968583-129968674   CU855722,CH242-107K9,2:129968453-129974459
(Clone quality: bE107K9 on chr=2; Num_of_Contigs=12; )
PCDHB12 location ⇒ 2:129643885-129643970    
PCDHB12 location ⇒ 2:129653516-129653581   CU972421,CH242-169A19,2:129644071-129653622
(Clone quality: bE169A19 on chr=2; Num_of_Contigs=19; )
PCDHB12 location ⇒ 2:129668172-129668373   CU972421,CH242-169A19,2:129662788-129681591
(Clone quality: bE169A19 on chr=2; Num_of_Contigs=19; )
PCDHB12 location ⇒ 2:129803170-129803371   CU855722,CH242-107K9,2:129802941-129813004
(Clone quality: bE107K9 on chr=2; Num_of_Contigs=12; )
PCDHB15 ENSSSCG00000014379 2:129666362-129668761   CU972421,CH242-169A19,2:129662788-129681591
(Clone quality: bE169A19 on chr=2; Num_of_Contigs=19; )
PCDHB15 location ⇒ 2:129548669-129548722   CU582771,CH242-139E18,2:129546818-129549257
(Clone quality: bE139E18 on chr=2; Num_of_Contigs=14; )
PCDHB15 location ⇒ 2:129666237-129666829   CU972421,CH242-169A19,2:129662788-129681591
(Clone quality: bE169A19 on chr=2; Num_of_Contigs=19; )
PCDHB15 location ⇒ 2:129711333-129711386   CU972421,CH242-169A19,2:129707148-129712682
(Clone quality: bE169A19 on chr=2; Num_of_Contigs=19; )
PCDHB15 location ⇒ 2:129816643-129817235   CU855722,CH242-107K9,2:129813105-129818579
(Clone quality: bE107K9 on chr=2; Num_of_Contigs=12; )
PCDHB2   ENSSSCG00000014380 2:129711091-129819833    
PCDHB4   ENSSSCG00000014378 2:129582734-129585434    
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-900, 901-950, 951-1000, 1001-1050, 1051-1100, 1101-1150, 1151-1200, 1201-1250, 1251-1300, 1301-1350, 1351-1400, 1401-1450, 1451-1500, 1501-1550, 1551-1600, 1601-1650, 1651-1700, 1701-1750, 1751-1800, 1801-1850, 1851-1900, 1901-1950, 1951-2000, 2001-2050, 2051-2100, 2101-2150, 2151-2200, 2201-21

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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