A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Records 1901 - 2000:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
C9orf167   ENSSSCG00000005845 1:294323846-294325093   CU928955,CH242-34I15,1:294322778-294354935
(Clone quality: bE34I15 on chr=1; Num_of_Contigs=4; )
C9orf169   ENSSSCG00000005857 1:294435302-294435700   CU928955,CH242-34I15,1:294431557-294452171
(Clone quality: bE34I15 on chr=1; Num_of_Contigs=4; )
C9orf171   ENSSSCG00000005727 1:287919626-287955448    
C9orf173   ENSSSCG00000005847 1:294339898-294341272   CU928955,CH242-34I15,1:294322778-294354935
(Clone quality: bE34I15 on chr=1; Num_of_Contigs=4; )
C9orf21   ENSSSCG00000011169 10:65022123-65036695   CU972489,CH242-181E4,10:65004607-65041493
(Clone quality: bE181E4 on chr=10; Num_of_Contigs=9; )
C9orf23   ENSSSCG00000010973 10:30634527-30635018   CU928717,CH242-142N10,10:30613639-30641888
(Clone quality: bE142N10 on chr=10; Num_of_Contigs=7; )
C9orf24   ENSSSCG00000010980 10:30897430-30912519    
C9orf25   ENSSSCG00000010979 10:30888918-30894231   CU571264,CH242-10D18,10:30874192-30908800
(Clone quality: bE10D18 on chr=10; Num_of_Contigs=8; )
C9orf3   ENSSSCG00000010943 10:26147406-26497159    
C9orf30   ENSSSCG00000005390 1:253828230-253853025   CU928622,CH242-112O3,1:253823561-253939042
(Clone quality: bE112O3 on chr=1; Num_of_Contigs=5; )
C9orf4   ENSSSCG00000005445 1:262858810-262885183   CU550650,CH242-116A3,1:262838524-262995303
(Clone quality: bE116A3 on chr=1; Num_of_Contigs=1; )
C9orf40   ENSSSCG00000005270 1:238516112-238521583   CU633596,CH242-504A9,1:238508848-238577312
(Clone quality: bE504A9 on chr=1; Num_of_Contigs=3; )
C9orf41   ENSSSCG00000005271 1:238534036-238568665   CU633596,CH242-504A9,1:238508848-238577312
(Clone quality: bE504A9 on chr=1; Num_of_Contigs=3; )
C9orf43   ENSSSCG00000005479 1:266804361-266824826   FP102008,CH242-508O3,1:266799704-266845426
(Clone quality: bE508O3 on chr=1; Num_of_Contigs=5; )
C9orf46   ENSSSCG00000005212 1:226602148-226657186    
C9orf5   ENSSSCG00000005444 1:262845595-262846149   CU550650,CH242-116A3,1:262838524-262995303
(Clone quality: bE116A3 on chr=1; Num_of_Contigs=1; )
C9orf50   ENSSSCG00000005674 1:284480442-284483972    
C9orf57   ENSSSCG00000005263 1:235744107-235896350    
C9orf6   ENSSSCG00000005440 1:262654624-262660553    
C9orf61 ENSSSCG00000005249 1:232991855-233036866   CU407274,CH242-482L1,1:232970429-233107951
(Clone quality: bE482L1 on chr=1; Num_of_Contigs=3; )
C9orf68   ENSSSCG00000005221 1:227470150-227482372   CU041279,CH242-42M5,1:227466825-227496173
(Clone quality: bE42M5 on chr=1; Num_of_Contigs=7; )
C9orf71   ENSSSCG00000005244 1:232221668-232226105   CU896594,CH242-392F14,1:232177818-232233439
(Clone quality: bE392F14 on chr=1; Num_of_Contigs=9; )
C9orf72   ENSSSCG00000011010 10:37528575-37553211   CU571192,CH242-151L17,10:37521948-37561116
(Clone quality: bE151L17 on chr=10; Num_of_Contigs=4; )
C9orf80   ENSSSCG00000005470 1:266288232-266305217    
C9orf82   ENSSSCG00000005127 1:205470610-205513983    
C9orf84   ENSSSCG00000005463 1:265352042-265377522   FP016086,CH242-109H23,1:265346767-265380976
(Clone quality: bE109H23 on chr=1; Num_of_Contigs=3; )
C9orf89   ENSSSCG00000008077 3:37784228-37788164    
C9orf9   ENSSSCG00000005734 1:288269851-288273817   CU469088,CH242-113L1,1:288269560-288273931
(Clone quality: bE113L1 on chr=1; Num_of_Contigs=17; )
C9orf91   ENSSSCG00000005492 1:268217597-268241609    
C9orf93   ENSSSCG00000005182 1:215980480-216284203    
C9orf95   ENSSSCG00000005272 1:238590339-238617454    
C9orf97   ENSSSCG00000005367 1:250965726-250985143    
C9orf98   ENSSSCG00000005732 1:288220580-288222646   CU326339,CH242-262P16,1:288172771-288226948
(Clone quality: bE262P16 on chr=1; Num_of_Contigs=6; )
CA1   ENSSSCG00000006142 4:53187533-53197072   CU151857,CH242-236F19,4:53183914-53263009
(Clone quality: bE236F19 on chr=4; Num_of_Contigs=10; )
CA10   ENSSSCG00000017594 12:25783748-25828445    
CA11   ENSSSCG00000003147 6:37712606-37717860   CU929759,CH242-294C24,6:37595303-37722216
(Clone quality: bE294C24 on chr=6; Num_of_Contigs=3; )
CA12   ENSSSCG00000004565 1:112045924-112116177    
CA13   ENSSSCG00000006143 4:53253553-53293677    
CA14   ENSSSCG00000006658 4:102779631-102781045   CU468675,CH242-4P3,4:102770988-102781211
(Clone quality: bE4P3 on chr=4; Num_of_Contigs=11; )
CA2   ENSSSCG00000006140 4:52952120-52968873   CU571274,CH242-157O11,4:52933471-52993062
(Clone quality: bE157O11 on chr=4; Num_of_Contigs=3; )
CA3 ENSSSCG00000006141 4:52985168-52995436    
CA6   ENSSSCG00000003391 6:46776211-46798106    
CA8   ENSSSCG00000006233 4:75641998-75712815    
CA9   ENSSSCG00000005315 1:247486665-247493333   CU062658,CH242-97C14,1:247426659-247546707
(Clone quality: bE97C14 on chr=1; Num_of_Contigs=2; )
CAB39   ENSSSCG00000016266 15:123918421-124009247    
CAB39L   ENSSSCG00000009397 11:18285223-18322932    
CABLES1   ENSSSCG00000003705 6:73661712-73753577    
CABLES2 ENSSSCG00000007540 17:64006676-64018123    
CABP1   ENSSSCG00000009913 14:40640432-40651116   CU062553,CH242-319N22,14:40627030-40656411
(Clone quality: bE319N22 on chr=14; Num_of_Contigs=5; )
CABP2   ENSSSCG00000012900 2:3359516-3363140    
CABP4   ENSSSCG00000012906 2:3450459-3453455   CU633429,CH242-6G2,2:3403551-3456026
(Clone quality: bE6G2 on chr=2; Num_of_Contigs=8; )
CABP5   ENSSSCG00000003126 6:37287363-37298222   FP102640,CH242-235B10,6:37275907-37358125
(Clone quality: bE235B10 on chr=6; Num_of_Contigs=12; )
CABP7   ENSSSCG00000009985 14:47258740-47268242   CU633725,CH242-61M8,14:47183164-47366877
(Clone quality: bE61M8 on chr=14; Num_of_Contigs=1; )
CABYR   ENSSSCG00000003711 6:74346051-74370917   CU457767,CH242-245O7,6:74312546-74409001
(Clone quality: bE245O7 on chr=6; Num_of_Contigs=3; )
CACHD1   ENSSSCG00000004829 1:148924355-149045229    
CACNA1A   ENSSSCG00000013754 2:56394573-56648933    
CACNA1C   ENSSSCG00000000763 5:65002112-65141065    
CACNA1D   ENSSSCG00000011455 13:29986203-30144848    
CACNA1E   ENSSSCG00000015543 9:115629053-115731238    
CACNA1F ENSSSCG00000012298 X:42760501-42794033    
CACNA1G ENSSSCG00000017562 12:24060894-24094898    
CACNA1I   ENSSSCG00000000082 5:4916295-4970998    
CACNA2D1   ENSSSCG00000015402 9:91842222-92058797    
CACNA2D2   ENSSSCG00000011412 13:27507680-27538828   CU861907,CH242-10C8,13:27490820-27610755
(Clone quality: bE10C8 on chr=13; Num_of_Contigs=3; )
CACNB1   ENSSSCG00000017510 12:21078286-21099106   FP085518,CH242-274F4,12:21003722-21101963
(Clone quality: bE274F4 on chr=12; Num_of_Contigs=3; )
CACNB2   ENSSSCG00000011040 10:43004842-43059614   FP102227,CH242-200J12,10:42987985-43075271
(Clone quality: bE200J12 on chr=10; Num_of_Contigs=3; )
CACNB3 ENSSSCG00000000176 5:13383979-13392426   CU914692,CH242-143P14,5:13374362-13396730
(Clone quality: bE143P14 on chr=5; Num_of_Contigs=6; )
CACNG1   ENSSSCG00000017271 12:11479591-11490680   CU639426,CH242-257I15,12:11407624-11507935
(Clone quality: bE257I15 on chr=12; Num_of_Contigs=3; )
CACNG2   ENSSSCG00000000140 5:7581330-7599506   CU861543,CH242-228E12,5:7494498-7671966
(Clone quality: bE228E12 on chr=5; Num_of_Contigs=1; )
CACNG3   ENSSSCG00000007831 3:20457027-20468701   FP102288,CH242-12G14,3:20444578-20575371
(Clone quality: bE12G14 on chr=3; Num_of_Contigs=1; )
CACNG4   ENSSSCG00000017270 12:11407711-11468596   CU639426,CH242-257I15,12:11407624-11507935
(Clone quality: bE257I15 on chr=12; Num_of_Contigs=3; )
CACNG5   ENSSSCG00000017269 12:11336894-11343225    
CACNG6   ENSSSCG00000003257 6:40359754-40378232    
CACNG7   ENSSSCG00000003254 6:40221171-40241085   CU855513,CH242-259K4,6:40218722-40247521
(Clone quality: bE259K4 on chr=6; Num_of_Contigs=12; )
CACNG8   ENSSSCG00000003255 6:40279060-40293544   CU855513,CH242-259K4,6:40278937-40293545
(Clone quality: bE259K4 on chr=6; Num_of_Contigs=12; )
CACYBP ENSSSCG00000015504 9:109993270-110006558   CU856703,CH242-461F11,9:109957487-110007620
(Clone quality: bE461F11 on chr=9; Num_of_Contigs=13; )
CADM2   ENSSSCG00000011999 13:123897257-123966866    
CADM4 ENSSSCG00000003061 6:34964060-34967939    
CADPS2   ENSSSCG00000016611 18:22526007-23020267    
CAGE1   ENSSSCG00000001023 7:4661135-4780426    
CALB1   ENSSSCG00000006125 4:47870808-47893791    
CALB2   ENSSSCG00000002730 6:10120471-10149583    
CALCA ENSSSCG00000013386 2:41163705-41168787   CU928260,CH242-273B21,2:41162604-41257476
(Clone quality: bE273B21 on chr=2; Num_of_Contigs=3; )
CALCB   ENSSSCG00000013390 2:41526806-41528502   CU606994,CH242-513N24,2:41487352-41529702
(Clone quality: bE513N24 on chr=2; Num_of_Contigs=5; )
CALCOCO2 ENSSSCG00000017543 12:22603567-22633877    
CALCR ENSSSCG00000015320 9:68503267-68547328   CU915449,CH242-148H14,9:68496256-68547592
(Clone quality: bE148H14 on chr=9; Num_of_Contigs=6; )
CALCRL   ENSSSCG00000016031 15:86516621-86637624    
CALD1 ENSSSCG00000016535 18:12519922-12636635    
CALHM1   ENSSSCG00000010601 14:119502466-119506650   CT956026,CH242-70J4,14:119384903-119545395
(Clone quality: bE70J4 on chr=14; Num_of_Contigs=4; )
CALHM2   ENSSSCG00000010600 14:119495614-119497820   CT956026,CH242-70J4,14:119384903-119545395
(Clone quality: bE70J4 on chr=14; Num_of_Contigs=4; )
CALHM3   ENSSSCG00000010602 14:119521178-119714661    
CALM1   ENSSSCG00000002435 7:120017403-120025188   CT827854,CH242-290O13,7:119962492-120179904
(Clone quality: bE290O13 on chr=7; Num_of_Contigs=1; )
CALML4   ENSSSCG00000004959 1:173357339-173361042   CU929738,CH242-251L9,1:173356570-173361426
(Clone quality: bE251L9 on chr=1; Num_of_Contigs=5; )
CALML5   ENSSSCG00000011141 10:61695653-61696102   FP016037,CH242-134E10,10:61637842-61759314
(Clone quality: bE134E10 on chr=10; Num_of_Contigs=5; )
CALR ENSSSCG00000013746 2:56285653-56289452   CU463133,CH242-121E19,2:56264935-56304744
(Clone quality: bE121E19 on chr=2; Num_of_Contigs=6; )
CALR3 ENSSSCG00000013858 2:61028872-61057769   CU694762,CH242-123E16,2:61018016-61070712
(Clone quality: bE123E16 on chr=2; Num_of_Contigs=2; )
CALU   ENSSSCG00000016581 18:18068836-18101629   CU861972,CH242-288G22,18:18062282-18138680
(Clone quality: bE288G22 on chr=18; Num_of_Contigs=5; )
CALY   ENSSSCG00000010776 14:148054801-148058279    
CAMK1   ENSSSCG00000011550 13:55235073-55245620   CU633418,CH242-443E24,13:55210129-55267796
(Clone quality: bE443E24 on chr=13; Num_of_Contigs=9; )
CAMK1D   ENSSSCG00000011111 10:56168591-56581512    
Go to records:
1-100

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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