Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of production-other traits:
22
Number of QTL / associations found:
161
Number of chromosomes where QTL / associations are found:
24
Chi-squared (χ2) test: are production-other traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome Z
1.64538
23
0.998329325823115
9.983293e-01
Chromosome 1
4084.62692
23
9e-41
2.160000e-39
Chromosome 2
60.40320
23
3.340022e-05
6.166194e-05
Chromosome 3
225.47162
23
3.569568e-35
4.283482e-34
Chromosome 4
35.53374
23
0.04599863
6.133151e-02
Chromosome 5
45.09890
23
0.003865191
5.456740e-03
Chromosome 6
1.64538
23
0.998329325823115
9.983293e-01
Chromosome 7
24.05546
23
0.4007427
4.808912e-01
Chromosome 8
129.81936
23
6.90186e-17
4.141116e-16
Chromosome 9
24.05546
23
0.4007427
4.808912e-01
Chromosome 10
72.70142
23
4.622055e-07
9.244110e-07
Chromosome 11
45.09890
23
0.003865191
5.456740e-03
Chromosome 12
1.64538
23
0.998329325823115
9.983293e-01
Chromosome 13
72.70142
23
4.622055e-07
9.244110e-07
Chromosome 14
45.09890
23
0.003865191
5.456740e-03
Chromosome 15
1.64538
23
0.998329325823115
9.983293e-01
Chromosome 16
106.86280
23
8.996227e-13
3.084421e-12
Chromosome 17
45.09890
23
0.003865191
5.456740e-03
Chromosome 18
72.70142
23
4.622055e-07
9.244110e-07
Chromosome 19
106.86280
23
8.996227e-13
3.084421e-12
Chromosome 20
72.70142
23
4.622055e-07
9.244110e-07
Chromosome 24
106.86280
23
8.996227e-13
3.084421e-12
Chromosome 26
72.70142
23
4.622055e-07
9.244110e-07
Chromosome 27
129.81936
23
6.90186e-17
4.141116e-16
Chi-squared (χ2) test: Which of the 22 production-other traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Bone index
2.83331
21
0.9999991
9.999991e-01
Bone mineral content
28.0963
21
0.1374412
3.153118e-01
Bone mineral density
16.92668
21
0.7155411
9.259944e-01
Carcass ash content
29.46793
21
0.1032129
2.838355e-01
Carcass protein content
13.34104
21
0.8962095
9.999991e-01
Carcass water content
11.38459
21
0.954764
9.999991e-01
Femur bending strength
65.75482
21
1.656052e-06
9.108286e-06
Femur bone mineral content
6.95447
21
0.99823
9.999991e-01
Femur bone mineral density
70.72213
21
2.690541e-07
1.973063e-06
Femur torsional strength
88.8846
21
2.511781e-10
5.525918e-09
Humerus bone mineral content
27.53027
21
0.1539829
3.153118e-01
Humerus bone mineral density
24.83331
21
0.2544557
3.732017e-01
Humerus breaking strength
5.66664
21
0.9996348
9.999991e-01
Tibia bone mineral content
41.12331
21
0.005413409
1.984917e-02
Tibia bone mineral density
19.6716
21
0.5421392
7.454414e-01
Tibia breaking strength
38.7699
21
0.01045504
3.285870e-02
Tibia dry matter content
25.83331
21
0.2128764
3.345201e-01
Tibia modulus of elasticity
25.83331
21
0.2128764
3.345201e-01
Tibia strain
25.83331
21
0.2128764
3.345201e-01
Tibia strength
44.32947
21
0.002119001
9.323604e-03
Tibia stress
27.41112
21
0.1576559
3.153118e-01
Transport loss
79.49998
21
9.786543e-09
1.076520e-07
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
24
χ2
=
5584.857740
Number of traits:
22
df
=
483
Number of QTLs:
161
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
