| QTL Map Information |
|---|
| Chromosome: | 13 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
11.5-11.5 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs317720141 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
FDR | 0.009 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | SGCD (sarcoglycan delta) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Birds were Korean native chickens. |
| Breeds associated:
n/a
|
| Design: | Birds were genotyped using the Illumina iSelect 60K chicken array and analyzed for feather pigmentation. A total of 53,257 SNPs were used for analysis. |
| Analysis: | Mixed models were used for GWAS. |
| Software: | GEMMA, PLINK, GCTA, GenABEL in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Park MN, Choi JA, Lee KT, Lee HJ, Choi BH, Kim H, Kim TH, Cho S, Lee T |
| Affiliation: | Division of Animal Genomics and Bioinformatics, National Institute of Animal Science, Rural Development Administration, Suwon, Korea |
| Title: | Genome-wide Association Study of Chicken Plumage Pigmentation |
| Journal: | Asian-Australasian Journal of Animal Sciences, 2013, 26(11):1523-8 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | back plumage pigmentation |
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