| QTL Map Information |
|---|
| Chromosome: | 6 |
| QTL Peak Location: | 144.12 (cM) |
| QTL Span: | 143.70-144.54 (cM)
146.5-147.5 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs81392513 |
| Peak: | |
| Lower, "Significant": | rs81392546 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
PostProbInc | 0.11 | | VARIANCE | 0.5 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were purebred Duroc barrows.
Animal breed (IDs) involved: |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina PorcineSNP60 v2 BeadChip and analyzed for fat content and fatty acid composition. A total of 36,432 SNPs were used for analysis. Additionally, two candidate QTN from the most highly associated regions (in SCD and LEPR) were genotyped. |
| Analysis: | A Bayes B approach was used. |
| Software: | PLINK, GenSel, Haploview, Rabbit |
| Notes: | *All SNP endpoints reported for this publication are approximated based on genome position of interval. |
| Links: | Edit |
| Reference |
|---|
| Authors: | Ros-Freixedes R, Gol S, Pena RN, Tor M, Ibáñez-Escriche N, Dekkers JC, Estany J |
| Affiliation: | Departament de Ciencia Animal, Universitat de Lleida-Agrotecnio Center, Lleida, Catalonia, Spain |
| Title: | Genome-Wide Association Study Singles Out SCD and LEPR as the Two Main Loci Influencing Intramuscular Fat Content and Fatty Acid Composition in Duroc Pigs |
| Journal: | PloS one, 2016, 11(3): e0152496 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | *SNP endpoints are approximated based on genome position of interval; IMF fitted in model as covariate; in longissimus dorsi |
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