| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | 16.86 (cM) |
| QTL Span: | 16.86-16.86 (cM)
55.3-55.3 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80909328 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 2.63 | | P_values | 0.02 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Boars were purebred animals from a composite Duroc sire line. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for androstenone levels in fat. In total, 47,897 SNPs were used for the analysis. |
| Analysis: | An additive model was used. |
| Software: | ASReml, PLINK, R software |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Duijvesteijn N, Knol EF, Merks JW, Crooijmans RP, Groenen MA, Bovenhuis H, Harlizius B |
| Affiliation: | IPG, Institute for Pig Genetics B.V., PO Box 43, 6640AA, Beuningen, the Netherlands |
| Title: | A genome-wide association study on androstenone levels in pigs reveals a cluster of candidate genes on chromosome 6. |
| Journal: | BMC genetics, 2010, 11: 42 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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