Trait centric view

1. Trait name:	Muscle pH
   Ontology terms:	VT:1000685, LPT:1000685

   83 genes are associated with this trait, with QTL/association found

   • ACACA: Acetyl-CoA carboxylase alpha
     evidenced by: QTL:193134; QTL:193136;
   • ACSL4: Acyl-CoA synthetase long-chain family member 4
     evidenced by: QTL:17877; QTL:17878;
   • ACTR10: Actin-related protein 10 homolog (S. cerevisiae)
     evidenced by: QTL:31526; QTL:31527;
   • AMBP: Alpha-1-microglobulin/bikunin precursor
     evidenced by: QTL:18035; QTL:18036; QTL:18037; QTL:18039;
   • ANK1: Ankyrin 1, erythrocytic
     evidenced by: QTL:12070;
   • ARF5: ADP-ribosylation factor 5
     evidenced by: QTL:21519;
   • ATP2B1: ATPase, Ca++ transporting, plasma membrane 1
     evidenced by: QTL:9892;
   • AVPR1B: Arginine vasopressin receptor 1B
     evidenced by: QTL:24231;
   • BCAP31: B-cell receptor-associated protein 31
     evidenced by: QTL:21927;
   • BRD2: Bromodomain containing 2
     evidenced by: QTL:31528;
   • BVES: Blood vessel epicardial substance
     evidenced by: QTL:17824;
   • C4BPA: Complement component 4 binding protein, alpha
     evidenced by: QTL:135454; QTL:135455;
   • C4H8ORF46: Chromosome 4 open reading frame, human C8orf46
     evidenced by: QTL:65773;
   • CAST: Calpastatin
     evidenced by: QTL:31453; QTL:31454; QTL:31455; QTL:31456; QTL:31457; QTL:31482; QTL:31484; QTL:31487; QTL:31488; QTL:31490; QTL:31494; QTL:31495; QTL:31500; QTL:31503; QTL:31504; QTL:31510; QTL:31511; QTL:31514;
   • COL5A3: Collagen, type V, alpha 3
     evidenced by: QTL:31525;
   • COPS5: COP9 signalosome subunit 5
     evidenced by: QTL:65761;
   • CREM: CAMP responsive element modulator
     evidenced by: QTL:24234;
   • CRH: Corticotropin releasing hormone
     evidenced by: QTL:65775; QTL:65776; QTL:65777; QTL:65778; QTL:65779;
   • CRHR1: Corticotropin releasing hormone receptor 1
     evidenced by: QTL:24224;
   • CRYBA2: Crystallin beta A2
     evidenced by: QTL:277278;
   • CS: Citrate synthase
     evidenced by: QTL:17831;
   • CSPP1: Centrosome and spindle pole associated protein 1
     evidenced by: QTL:65758; QTL:65759; QTL:65760;
   • CYP7B1: Cytochrome P450, family 7, subfamily B, polypeptide 1
     evidenced by: QTL:65794;
   • DHPS: Deoxyhypusine synthase
     evidenced by: QTL:31521;
   • DHRS4: Dehydrogenase/reductase (SDR family) member 4
     evidenced by: QTL:135450;
   • EBAG9: Estrogen receptor binding site associated, antigen, 9
     evidenced by: QTL:65737;
   • EPB42: Erythrocyte membrane protein band 4.2
     evidenced by: QTL:31518; QTL:31519;
   • EPOR: Erythropoietin receptor
     evidenced by: QTL:12102;
   • FARSA: Phenylalanyl-tRNA synthetase, alpha subunit
     evidenced by: QTL:31523;
   • FASN: Fatty acid synthase
     evidenced by: QTL:193125; QTL:193126;
   • GC: Group-specific component (vitamin D binding protein)
     evidenced by: QTL:18040;
   • GPBAR1: G protein-coupled bile acid receptor 1
     evidenced by: QTL:277271;
   • GRIK5: Glutamate ionotropic receptor kainate type subunit 5
     evidenced by: QTL:277255;
   • GRM8: Glutamate receptor, metabotropic 8
     evidenced by: QTL:264227;
   • HERC1: HECT and RLD domain containing E3 ubiquitin protein ligase family member 1
     evidenced by: QTL:31524;
   • HMGA2: High mobility group AT-hook 2
     evidenced by: QTL:12085;
   • HNF1A: HNF1 homeobox A
     evidenced by: QTL:23610; QTL:23614;
   • IL1B: Interleukin 1, beta
     evidenced by: QTL:2965; QTL:374;
   • KDM3A: Lysine (K)-specific demethylase 3A
     evidenced by: QTL:31516; QTL:31517;
   • LEPR: Leptin receptor
     evidenced by: QTL:296738;
   • LIFR: Leukemia inhibitory factor receptor alpha
     evidenced by: QTL:19438;
   • LOC100513647: Uncharacterized LOC100513647
     evidenced by: QTL:31522;
   • LOC100524619: Uncharacterized LOC100524619
     evidenced by: QTL:65764;
   • LOC100621816: Deubiquitinating protein VCIP135
     evidenced by: QTL:65768;
   • LOC100738152: Transcription factor SOX-6-like
     evidenced by: QTL:56220;
   • LOC102161575: Serine/threonine-protein kinase Sgk3-like
     evidenced by: QTL:65767;
   • LOC102162467: Uncharacterized LOC102162467
     evidenced by: QTL:65799;
   • LRRK2: Leucine-rich repeat kinase 2
     evidenced by: QTL:3227;
   • MAN2B1: Mannosidase, alpha, class 2B, member 1
     evidenced by: QTL:31530;
   • MAOA: Monoamine oxidase A
     evidenced by: QTL:24221;
   • MDH1: Malate dehydrogenase 1, NAD (soluble)
     evidenced by: QTL:21517; QTL:21521;
   • ME1: Malic enzyme 1, NADP(+)-dependent, cytosolic
     evidenced by: QTL:12647; QTL:12648;
   • MIR133B: MicroRNA mir-133b
     evidenced by: QTL:66008;
   • MTFR1: Mitochondrial fission regulator 1
     evidenced by: QTL:65782;
   • MTMR12: Myotubularin related protein 12
     evidenced by: QTL:277256;
   • MYCT1: MYC target 1
     evidenced by: QTL:240080; QTL:240081;
   • MYF6: Myogenic factor 6 (herculin)
     evidenced by: QTL:28201;
   • NR3C1: Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
     evidenced by: QTL:25303;
   • PCGF1: Polycomb group ring finger 1
     evidenced by: QTL:21518;
   • PHACTR3: Phosphatase and actin regulator 3
     evidenced by: QTL:125810;
   • PHKG2: Phosphorylase kinase catalytic subunit gamma 2
     evidenced by: QTL:168854;
   • PHKG: Phosphorylase kinase gamma subunit
     evidenced by: QTL:301146; QTL:37553;
   • PKHD1L1: Polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1
     evidenced by: QTL:65738; QTL:65739; QTL:65740; QTL:65741;
   • PKM: Pyruvate kinase, muscle
     evidenced by: QTL:13462; QTL:13463; QTL:13469; QTL:13470;
   • PPP1R42: Protein phosphatase 1, regulatory subunit 42
     evidenced by: QTL:65763;
   • PRKAG3: Protein kinase, AMP-activated, gamma 3 non-catalytic subunit
     evidenced by: QTL:125090; QTL:17763; QTL:17764; QTL:179183; QTL:179191; QTL:179205; QTL:193750; QTL:23998; QTL:24004; QTL:24005; QTL:24008; QTL:24013; QTL:24014; QTL:24015; QTL:24017; QTL:24020; QTL:301152;
   • PROX1: Prospero homeobox 1
     evidenced by: QTL:179339;
   • RTFDC1: Protein RTF2 homolog
     evidenced by: QTL:9789;
   • RYR1: Ryanodine receptor 1 (skeletal)
     evidenced by: QTL:7672; QTL:7673;
   • SERPING1: Serpin family G member 1
     evidenced by: QTL:135451;
   • SLC15A4: Solute carrier family 15 member 4
     evidenced by: QTL:138395;
   • SNX9: Sorting nexin 9
     evidenced by: QTL:240077; QTL:240078;
   • SPINT1: Serine peptidase inhibitor, Kunitz type 1
     evidenced by: QTL:31520;
   • SUMF2: Sulfatase modifying factor 2
     evidenced by: QTL:168852;
   • SYBU: Syntabulin (syntaxin-interacting)
     evidenced by: QTL:65736;
   • TIAM2: TIAM Rac1 associated GEF 2
     evidenced by: QTL:240079; QTL:240094; QTL:240116;
   • TNC: Tenascin C
     evidenced by: QTL:17769; QTL:17770;
   • TNS1: Tensin 1
     evidenced by: QTL:277266; QTL:277267; QTL:277268; QTL:277269;
   • TRIM55: Tripartite motif containing 55
     evidenced by: QTL:65780; QTL:65781;
   • TRMT1: TRNA methyltransferase 1 homolog (S. cerevisiae)
     evidenced by: QTL:31529;
   • TTLL4: Tubulin tyrosine ligase like 4
     evidenced by: QTL:277275;
   • UBL5: Ubiquitin-like 5
     evidenced by: QTL:65994;
   • VTN: Vitronectin
     evidenced by: QTL:9844; QTL:9845;
   470 correlations are found involving Muscle pH
    

2. Trait name:	Muscle pH decline
   Ontology terms:	VT:1000685

   4 genes are associated with this trait, with QTL/association found

   • CHRM1: Cholinergic receptor, muscarinic 1
     evidenced by: QTL:21929;
   • LRRK2: Leucine-rich repeat kinase 2
     evidenced by: QTL:3226;
   • MDH1: Malate dehydrogenase 1, NAD (soluble)
     evidenced by: QTL:21522;
   • OXNAD1: Oxidoreductase NAD-binding domain containing 1
     evidenced by: QTL:21930;
   12 correlations are found involving Muscle pH decline
    

3. Trait name:	Osteochondrosis score
   Ontology terms:	VT:0002932, CMO:0001107

   1 gene are associated with this trait, with QTL/association found

   • GPI: Glucose-6-phosphate isomerase
     evidenced by: QTL:7664; QTL:7665;
   4 correlations are found involving Osteochondrosis score
    

4. Trait name:	Triglyceride level
   Ontology terms:	VT:0002644, CMO:0000118

   1 gene are associated with this trait, with QTL/association found

   • PFKM: Phosphofructokinase, muscle
     evidenced by: QTL:23525; QTL:23526;